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. Author manuscript; available in PMC: 2018 Nov 17.
Published in final edited form as: Cell Chem Biol. 2018 Mar 8;25(5):530–539.e7. doi: 10.1016/j.chembiol.2018.02.004
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial Strains
Escherichia coli K12 BW25115 Keio collection (Baba et al., 2006) N/A
Escherichia coli K12 BW25113ΔsbmA Keio collection (Baba et al., 2006) Strain number JW0368-1
Escherichia coli K12 BW25113ΔyjiL Keio collection (Baba et al., 2006) Strain number JW5785-1
Escherichia coli K12 BW25113ΔyjiL/ΔsbmA (Krizsan et al., 2015) N/A
Escherichia coli N281 (Wittmann et al., 1973) N/A
Escherichia coli N282 (Wittmann et al., 1973) N/A
Escherichia coli AB301 (Bouck and Adelberg, 1970) N/A
Escherichia coli SQ110ΔtolC (Florin et al., 2017) N/A
Escherichia coli SQ110ΔtolC A2059C (Florin et al., 2017) N/A
Escherichia coli SQ110ΔtolC A2059G (Florin et al., 2017) N/A
Escherichia coli SQ110ΔtolC A2305C (Florin et al., 2017) N/A
Thermus thermophilus HB8 DSMZ Catalog # DSM-579
BL21 Star Thermofisher Catalog # C601003
Biological Samples
Tursiops truncates muscle tissue Mediterranean Marine Mammal Tissue Bank N/A
tRNA from Escherichia coli MRE600 Roche Catalog # 10109550001
Thermus thermophilus 70S ribosomes This study N/A
Chemicals, Peptides, and Recombinant Proteins
YfiA protein This study N/A
Tur1A This study N/A
Tur1B This study N/A
Tur1A(Cys33)-BY This study N/A
Bac7(Cys36)-BY This study N/A
Myticalin A5 (Leoni et al., 2017) N/A
Tur1A(1-16) This study N/A
Tur1A(8-24) This study N/A
Tur1A(16-32) This study N/A
Kanamycin Sigma Catalog # 60615
Erythromycin Sigma Catalog # E6376
Spectinomycin Sigma Catalog # S4014
Thiostrepton Sigma Catalog # T8902
Edeine N/A N/A
Fmoc-Arg(Pbf)-NovaSyn® TGA Novabiochem Catalog # 856042
Trifluoroacetic acid (TFA) Sigma Catalog # 91700
3,6-dioxa-1,8-octanedithiol (DODT) Sigma Catalog # 465178
Thioanisole Sigma Catalog # 88470
Triisopropylsilane (TIPS) Sigma Catalog # 233781
N,N'-diisopropylcarbodiimide (DIC) Fluca N/A
N-methylimidazole VWR Catalog # AAA12575-22
Dimethylformamide (DMF) VWR Catalog # BDH1117-4LG
Piperidine Acros Organics Catalog # P/3520
BDP FL maleimide Lumiprobe Catalog # 21480
N-Methyl-2-Pyrrolidinone VWR Catalog # CA71007-814
1-hydroxybenzotriazole hydrate (hOBt) Sigma Catalog # 54802
Prpidium iodide Sigma Catalog # P4170
RNasin Promega Catalog # N2511
rNTPs Sigma Catalog # 27-2025-01
PEG-8000 Sigma Catalog # 1546605
AMV reverse transcriptase NEB Catalog # M0277
Hemo Klen Taq NEB Catalog # M0332
ddNTPs Sigma Catalog # GE27-2045-01
2-methyl-2,4-pentanediol (MPD) Sigma Catalog # 000000008208191000
Critical Commercial Assays
E.Z.N.A.® Mollusc DNA Kit Omega Bio-Tek Catalog # D3373
Perfectprep® Gel Clean-up Kit Eppendorf N/A
RTS™ 100 Escherichia coli HY Biotech Rabbit Catalog # BR1400101
Luciferase Assay System Promega Catalog # E1500
PURExpress in vitro transcription/translation kit NEB Catalog # E6800S
QIAquick Nucleotide Removal Kit Qiagen Catalog # 28304
Deposited Data
The crystal structure of the Tur1A-70S complex This study PDB ID 6FKR (https://www.rcsb.org/structure/6fkr)
Oligonucleotides
Tur1A FW 5’-CTTGTGACCCTGGGA-3’ Eurofins Genomics N/A
Tur1A RV 5’-ATAACTTCCTCCAGGCTTCA-3’ Eurofins Genomics N/A
NV-1 5’GGTTATAATGAATTTTGCTTATTAAC-3’ Thermo-Fisher N/A
Recombinant DNA
H-ns-PPP This study N/A
pGS21A (Polikanov et al., 2014) N/A
2XermCL_S10K (Arenz et al., 2016) N/A
Software and Algorithms
Genomics Workbench 5.1 (CLCbio) QIAGEN bioinformatics https://www.qiagenbioinformatics.com/products/clc-genomics-workbench/
FCS Express3 software De Novo Software https://www.denovosoftware.com/site/DownloadLanding.shtml
XDS (Kabsch, 2010) http://xds.mpimf-heidelberg.mpg.de/html_doc/downloading.html
Phenix (Adams et al., 2010) https://www.phenix-online.org/download
Coot (Emsley and Cowtan, 2004) https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Other
Hitachi 3130 Genetic Analyzer Applied Biosystems N/A
Biotage Initiator+ Alstra Biotage Catalog # 356017
Kinetex, C18, 2.6 μm, 100 Å, 50x4,6 mm Phenomenex Catalog # 00A-4462-E0 00
Esquire 4000 Bruker Daltonics N/A
NanoDrop2000 Thermo Fisher Scientific Catalog # ND-2000
Jupiter™, C18, 5 μm, 300 Å, 100x10 mm Phenomenex Catalog # 00G-4053-E0
MultiPep RSi Intavis N/A
Shim-pack VP-ODS column (120 Å, 150x4.6 mm,) Shimadzu N/A
Cytomics FC 500 Beckman-Coulter N/A
Tecan Infinite M1000 Tecan N/A
M-110L Microfluidizer Processor Microfluidics N/A
Typhoon FLA9500 GE Healthcare Catalog # 29187191
Protino Ni-NTA agarose beads Macherey-Nagel Catalog # 745400
Superdex HiLoad S75 16/600 GE Healthcare Catalog # 28989333