Bacterial Strains |
Escherichia coli K12 BW25115 |
Keio collection (Baba et al., 2006) |
N/A |
Escherichia coli K12 BW25113ΔsbmA
|
Keio collection (Baba et al., 2006) |
Strain number JW0368-1 |
Escherichia coli K12 BW25113ΔyjiL
|
Keio collection (Baba et al., 2006) |
Strain number JW5785-1 |
Escherichia coli K12 BW25113ΔyjiL/ΔsbmA
|
(Krizsan et al., 2015) |
N/A |
Escherichia coli N281 |
(Wittmann et al., 1973) |
N/A |
Escherichia coli N282 |
(Wittmann et al., 1973) |
N/A |
Escherichia coli AB301 |
(Bouck and Adelberg, 1970) |
N/A |
Escherichia coli SQ110ΔtolC
|
(Florin et al., 2017) |
N/A |
Escherichia coli SQ110ΔtolC A2059C |
(Florin et al., 2017) |
N/A |
Escherichia coli SQ110ΔtolC A2059G |
(Florin et al., 2017) |
N/A |
Escherichia coli SQ110ΔtolC A2305C |
(Florin et al., 2017) |
N/A |
Thermus thermophilus HB8 |
DSMZ |
Catalog # DSM-579 |
BL21 Star |
Thermofisher |
Catalog # C601003 |
Biological Samples |
|
|
Tursiops truncates muscle tissue |
Mediterranean Marine Mammal Tissue Bank |
N/A |
tRNA from Escherichia coli MRE600 |
Roche |
Catalog # 10109550001 |
Thermus thermophilus 70S ribosomes |
This study |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
YfiA protein |
This study |
N/A |
Tur1A |
This study |
N/A |
Tur1B |
This study |
N/A |
Tur1A(Cys33)-BY |
This study |
N/A |
Bac7(Cys36)-BY |
This study |
N/A |
Myticalin A5 |
(Leoni et al., 2017) |
N/A |
Tur1A(1-16) |
This study |
N/A |
Tur1A(8-24) |
This study |
N/A |
Tur1A(16-32) |
This study |
N/A |
Kanamycin |
Sigma |
Catalog # 60615 |
Erythromycin |
Sigma |
Catalog # E6376 |
Spectinomycin |
Sigma |
Catalog # S4014 |
Thiostrepton |
Sigma |
Catalog # T8902 |
Edeine |
N/A |
N/A |
Fmoc-Arg(Pbf)-NovaSyn® TGA |
Novabiochem |
Catalog # 856042 |
Trifluoroacetic acid (TFA) |
Sigma |
Catalog # 91700 |
3,6-dioxa-1,8-octanedithiol (DODT) |
Sigma |
Catalog # 465178 |
Thioanisole |
Sigma |
Catalog # 88470 |
Triisopropylsilane (TIPS) |
Sigma |
Catalog # 233781 |
N,N'-diisopropylcarbodiimide (DIC) |
Fluca |
N/A |
N-methylimidazole |
VWR |
Catalog # AAA12575-22 |
Dimethylformamide (DMF) |
VWR |
Catalog # BDH1117-4LG |
Piperidine |
Acros Organics |
Catalog # P/3520 |
BDP FL maleimide |
Lumiprobe |
Catalog # 21480 |
N-Methyl-2-Pyrrolidinone |
VWR |
Catalog # CA71007-814 |
1-hydroxybenzotriazole hydrate (hOBt) |
Sigma |
Catalog # 54802 |
Prpidium iodide |
Sigma |
Catalog # P4170 |
RNasin |
Promega |
Catalog # N2511 |
rNTPs |
Sigma |
Catalog # 27-2025-01 |
PEG-8000 |
Sigma |
Catalog # 1546605 |
AMV reverse transcriptase |
NEB |
Catalog # M0277 |
Hemo Klen Taq |
NEB |
Catalog # M0332 |
ddNTPs |
Sigma |
Catalog # GE27-2045-01 |
2-methyl-2,4-pentanediol (MPD) |
Sigma |
Catalog # 000000008208191000 |
Critical Commercial Assays |
E.Z.N.A.® Mollusc DNA Kit |
Omega Bio-Tek |
Catalog # D3373 |
Perfectprep® Gel Clean-up Kit |
Eppendorf |
N/A |
RTS™ 100 Escherichia coli HY |
Biotech Rabbit |
Catalog # BR1400101 |
Luciferase Assay System |
Promega |
Catalog # E1500 |
PURExpress in vitro transcription/translation kit |
NEB |
Catalog # E6800S |
QIAquick Nucleotide Removal Kit |
Qiagen |
Catalog # 28304 |
Deposited Data |
The crystal structure of the Tur1A-70S complex |
This study |
PDB ID 6FKR (https://www.rcsb.org/structure/6fkr) |
Oligonucleotides |
Tur1A FW 5’-CTTGTGACCCTGGGA-3’ |
Eurofins Genomics |
N/A |
Tur1A RV 5’-ATAACTTCCTCCAGGCTTCA-3’ |
Eurofins Genomics |
N/A |
NV-1 5’GGTTATAATGAATTTTGCTTATTAAC-3’ |
Thermo-Fisher |
N/A |
Recombinant DNA |
H-ns-PPP |
This study |
N/A |
pGS21A |
(Polikanov et al., 2014) |
N/A |
2XermCL_S10K |
(Arenz et al., 2016) |
N/A |
Software and Algorithms |
Genomics Workbench 5.1 (CLCbio) |
QIAGEN bioinformatics |
https://www.qiagenbioinformatics.com/products/clc-genomics-workbench/ |
FCS Express3 software |
De Novo Software |
https://www.denovosoftware.com/site/DownloadLanding.shtml |
XDS |
(Kabsch, 2010) |
http://xds.mpimf-heidelberg.mpg.de/html_doc/downloading.html |
Phenix |
(Adams et al., 2010) |
https://www.phenix-online.org/download |
Coot |
(Emsley and Cowtan, 2004) |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
Other |
Hitachi 3130 Genetic Analyzer |
Applied Biosystems |
N/A |
Biotage Initiator+ Alstra |
Biotage |
Catalog # 356017 |
Kinetex, C18, 2.6 μm, 100 Å, 50x4,6 mm |
Phenomenex |
Catalog # 00A-4462-E0 00 |
Esquire 4000 |
Bruker Daltonics |
N/A |
NanoDrop2000 |
Thermo Fisher Scientific |
Catalog # ND-2000 |
Jupiter™, C18, 5 μm, 300 Å, 100x10 mm |
Phenomenex |
Catalog # 00G-4053-E0 |
MultiPep RSi |
Intavis |
N/A |
Shim-pack VP-ODS column (120 Å, 150x4.6 mm,) |
Shimadzu |
N/A |
Cytomics FC 500 |
Beckman-Coulter |
N/A |
Tecan Infinite M1000 |
Tecan |
N/A |
M-110L Microfluidizer Processor |
Microfluidics |
N/A |
Typhoon FLA9500 |
GE Healthcare |
Catalog # 29187191 |
Protino Ni-NTA agarose beads |
Macherey-Nagel |
Catalog # 745400 |
Superdex HiLoad S75 16/600 |
GE Healthcare |
Catalog # 28989333 |