Table 2.
Summary of the marker loci significantly associated with CII values mapped in the whole panel and the two subgroups.
| Population | Locus | Chr. | Position (Mb) | 2016 | 2017 | ||
|---|---|---|---|---|---|---|---|
| R2a | P-value | R2 | P-value | ||||
| The whole panel | SSR009175 | 1 | 6.03 | 0.118 | 6.56E-04 | 0.152 | 3.70E-05 |
| SSR009461 | 1 | 10.99 | –b | nsc | 0.074 | 1.90E-04 | |
| CMCT505 | 1 | 16.53 | 0.204 | 2.43E-05 | 0.166 | 5.10E-08 | |
| SSR010787 | 1 | 25.77 | – | ns | 0.133 | 1.12E-04 | |
| DE1329 | 2 | 23.83 | 0.214 | 5.56E-04 | 0.107 | 3.02E-05 | |
| M34P | 3 | 9.53 | 0.070 | 7.55E-05 | – | ns | |
| SSR015399 | 3 | 10.02 | 0.098 | 1.12E-03 | 0.131 | 1.40E-04 | |
| SSR015533 | 3 | 12.12 | 0.053 | 3.92E-03 | 0.099 | 3.87E-05 | |
| SSR015603 | 3 | 13.55 | – | ns | 0.092 | 4.14E-04 | |
| SSR015784 | 3 | 16.68 | 0.187 | 3.38E-07 | 0.126 | 4.01E-03 | |
| SSR015829 | 3 | 17.05 | 0.208 | 4.22E-05 | 0.115 | 3.05E-03 | |
| CMTAN142 | 4 | 3.95 | 0.342 | 5.90E-06 | 0.191 | 7.23E-07 | |
| SSR018207 | 4 | 6.20 | 0.104 | 2.20E-03 | – | ns | |
| SSR019550 | 4 | 22.24 | 0.089 | 1.04E-03 | 0.210 | 2.77E-04 | |
| SSR019803 | 4 | 24.14 | 0.068 | 8.52E-04 | 0.106 | 3.41E-03 | |
| DE1035 | 5 | 1.07 | 0.100 | 3.59E-03 | 0.037 | 4.11E-03 | |
| HNM41 | 6 | 4.57 | 0.211 | 6.18E-05 | – | ns | |
| CMCTN38 | 6 | 35.85 | – | ns | 0.082 | 2.16E-05 | |
| CMAGN75 | 7 | 2.40 | 0.086 | 2.34E-03 | 0.114 | 1.24E-04 | |
| SSR028465 | 7 | 17.42 | 0.117 | 6.78E-07 | – | ns | |
| ECM182 | 7 | 21.01 | 0.144 | 2.29E-04 | 0.103 | 1.20E-03 | |
| ECM88 | 8 | 1.15 | – | ns | 0.098 | 1.05E-03 | |
| HNM2 | 8 | 1.80 | 0.130 | 3.23E-04 | – | ns | |
| M8-1P | 8 | 7.82 | 0.077 | 3.06E-03 | – | ns | |
| HNM31 | 8 | 11.15 | 0.050 | 2.50E-03 | 0.111 | 2.24E-04 | |
| SSR031575 | 8 | 12.20 | 0.226 | 1.05E-04 | 0.127 | 5.67E-04 | |
| SSR032562 | 9 | 0.17 | 0.100 | 6.22E-04 | – | ns | |
| SSR034244 | 9 | 18.01 | 0.049 | 3.50E-03 | – | ns | |
| SSR035466 | 10 | 1.33 | 0.069 | 4.20E-04 | 0.086 | 3.11E-03 | |
| SSR036720 | 10 | 13.39 | 0.122 | 5.87E-05 | 0.097 | 2.77E-03 | |
| HSSR002 | 10 | 20.80 | 0.207 | 5.02E-05 | – | ns | |
| SSR036952 | 11 | 0.130 | 0.065 | 1.85E-03 | – | ns | |
| SSR038777 | 11 | 21.61 | – | ns | 0.120 | 1.12E-03 | |
| DE1917 | 12 | 2.66 | 0.150 | 9.47E-05 | – | ns | |
| HNM38 | 12 | 23.84 | 0.054 | 7.02E-04 | – | ns | |
| melo | CMCT505 | 1 | 16.53 | 0.306 | 2.24E-07 | 0.140 | 1.01E-05 |
| SSR010993 | 1 | 28.03 | 0.197 | 7.74E-03 | 0.103 | 6.72E-04 | |
| DE1329 | 2 | 23.83 | 0.208 | 2.30E-03 | 0.070 | 3.36E-04 | |
| CSWCT10 | 3 | 3.92 | 0.075 | 6.72E-04 | – | ns | |
| SSR015399 | 3 | 10.02 | 0.133 | 7.36E-03 | 0.225 | 4.03E-03 | |
| SSR015829 | 3 | 17.05 | 0.223 | 2.24E-05 | 0.101 | 4.38E-03 | |
| CMCTTN175 | 3 | 20.90 | – | ns | 0.141 | 2.24E-04 | |
| SSR017422 | 4 | 0.27 | – | ns | 0.117 | 3.36E-04 | |
| CMTAN142 | 4 | 3.95 | – | ns | 0.094 | 1.01E-03 | |
| SSR018207 | 4 | 6.20 | 0.213 | 2.46E-03 | 0.078 | 6.72E-04 | |
| SSR019550 | 4 | 22.24 | 0.096 | 4.39E-03 | 0.059 | 6.72E-04 | |
| HNM41 | 6 | 4.57 | 0.169 | 6.12E-04 | – | ns | |
| SSR026426 | 6 | 25.84 | 0.142 | 4.48E-04 | – | ns | |
| CMAGN75 | 7 | 2.40 | 0.202 | 1.12E-07 | 0.093 | 5.39E-03 | |
| ECM182 | 7 | 21.01 | – | ns | 0.247 | 2.32E-06 | |
| ECM88 | 8 | 1.15 | – | ns | 0.079 | 4.48E-03 | |
| SSR031575 | 8 | 12.20 | 0.197 | 1.57E-04 | 0.106 | 5.11E-03 | |
| CMAT141 | 8 | 26.43 | 0.161 | 2.51E-04 | 0.050 | 3.33E-03 | |
| SSR032562 | 9 | 0.17 | 0.069 | 8.96E-05 | 0.075 | 8.76E-04 | |
| SSR036581 | 10 | 11.21 | 0.048 | 3.01E-03 | – | ns | |
| SSR038830 | 11 | 22.07 | – | ns | 0.120 | 1.91E-03 | |
| agrestis | HNM10 | 1 | 2.81 | – | ns | 0.103 | 8.95E-05 |
| CMCT505 | 1 | 16.53 | 0.147 | 5.22E-03 | 0.221 | 4.10E-07 | |
| SSR010993 | 1 | 28.03 | 0.195 | 4.07E-05 | 0.088 | 1.01E-03 | |
| HNM15 | 2 | 0.18 | 0.063 | 5.30E-03 | 0.121 | 3.92E-03 | |
| TJ24 | 2 | 15.39 | 0.071 | 2.46E-04 | – | ns | |
| SSR014992 | 3 | 4.79 | 0.101 | 3.92E-03 | – | ns | |
| SSR015399 | 3 | 10.02 | 0.077 | 8.92E-04 | 0.084 | 4.59E-03 | |
| SSR015829 | 3 | 17.05 | 0.119 | 5.26E-03 | 0.122 | 4.61E-03 | |
| CMCTTN175 | 3 | 20.90 | 0.090 | 2.13E-03 | – | ns | |
| CMTAN142 | 4 | 3.95 | 0.114 | 4.48E-05 | – | ns | |
| SSR019803 | 4 | 24.14 | – | ns | 0.068 | 2.80E-03 | |
| SSR022483 | 5 | 17.73 | – | ns | 0.048 | 3.58E-03 | |
| SSR025828 | 6 | 18.79 | 0.086 | 2.13E-03 | – | ns | |
| ECM182 | 7 | 21.01 | 0.133 | 3.25E-04 | – | ns | |
| HNAM40 | 8 | 20.88 | 0.106 | 3.25E-03 | 0.202 | 3.38E-04 | |
| SSR032536 | 8 | 24.10 | 0.192 | 6.07E-04 | 0.116 | 4.03E-03 | |
| SSR036720 | 10 | 13.39 | – | ns | 0.080 | 5.34E-03 | |
| HSSR002 | 10 | 20.80 | 0.105 | 3.70E-03 | – | ns | |
aR2 the proportion of the total phenotypic variance explained by the SSR locus; bnot given; cns, no significant.