Table 3.
Total injected embryos, number and percent of dead and alive embryos, mean time to death (days post fertilization, dpf) ± standard error (SEM), mean time to hatch (dpf) ± SEM, hatch % ± SEM, fry survival % ± SEM and mean fry survival time (dpf) ± SEM for channel catfish (Ictalurus punctatus) embryos injected with different dosages of guide RNAs (gRNAs) and Cas9 protein targeting the channel catfish toll/interleukin 1 receptor domain-containing adapter molecule (TICAM 1) gene and rhamnose binding lectin (RBL) gene.
Group | Total injected embryos | Dead embryos | Alive embryos | Embryo mean time to death (dpf) ± SEM | Mean time to hatch (dpf) ± SEM | Hatch % ± SEM | Fry survival % ± SEM | Mean fry survival time (dpf) ± SEM | ||
---|---|---|---|---|---|---|---|---|---|---|
Number | % | Number | % | |||||||
TICAM 1 | ||||||||||
Low | 140 | 63 | 45.0 | 77 | 55.0 | 6.0 ± 0.22a | 7.0 ± 0.08a | 55.0 ± 13.63ab | 70.1 ± 6.99 ab | 15.2 ± 0.49a |
Medium | 126 | 100 | 79.4 | 26 | 20.6 | 4.2 ± 0.21b | 7.4 ± 0.13a | 20.6 ± 9.65a | 53.8 ± 9.35 ab | 14.3 ± 0.81a |
High | 108 | 88 | 81.5 | 20 | 18.5 | 4.3 ± 0.24b | 7.3 ± 0.18a | 18.5 ± 5.71a | 80.0 ± 19.90 ab | 16.2 ± 0.83a |
iCTRL | 159 | 83 | 52.2 | 76 | 47.8 | 5.9 ± 0.18a | 7.1 ± 0.10a | 47.8 ± 4.85ab | 67.1 ± 1.51 a | 15.1 ± 0.49a |
nCTRL | 263 | 60 | 22.8 | 203 | 77.2 | 7.4 ± 0.08 | 7.1 ± 0.05a | 77.2 ± 7.60b | 96.6 ± 1.31 b | 17.7 ± 0.13 |
RBL | ||||||||||
Low | 166 | 120 | 72.2 | 46 | 27.7 | 4.6 ± 0.18 a | 6.3 ± 0.07a | 27.7 ± 2.57 | 80.4 ± 7.06 | 16.2 ± 0.56a |
Medium | 124 | 104 | 83.9 | 20 | 16.1 | 4.2 ± 0.22 a | 6.5 ± 0.12ab | 16.1 ± 0.75 a | 75.0 ± 12.37 | 16.0 ± 0.78a |
High | 173 | 145 | 83.8 | 28 | 16.2 | 5.0 ± 0.15 a | 6.6 ± 0.10b | 16.2 ± 1.27 a | 62.1 ± 2.75 | 14.8 ± 0.78a |
iCTRL | 114 | 34 | 29.8 | 80 | 70.2 | 5.9 ± 0.17 | 6.1 ± 0.03c | 70.2 ± 0.90 | 97.5 ± 1.27 | 17.8 ± 0.12b |
nCTRL | 244 | 32 | 13.1 | 212 | 86.9 | 6.7 ± 0.07 | 6.1 ± 0.02c | 86.9 ± 4.25 | 93.4 ± 3.39 | 17.4 ± 0.15b |
Combined TICAM1 and RBL | ||||||||||
Low | 306 | 183 | 59.8b | 123 | 39.8 | 5.4 ± 0.15 | 6.7 ± 0.06b | 40.2 ± 8.68b | 74.0 ± 4.82a | 15.6 ± 0.37ab |
Medium | 250 | 204 | 81.6a | 46 | 18.4 | 4.3 ± 0.16a | 7.0 ± 0.11a | 18.4 ± 4.55a | 63.0 ± 7.75a | 15.0 ± 0.58a |
High | 281 | 232 | 82.6a | 49 | 17.4 | 4.8 ± 0.14a | 6.9 ± 0.10 ab | 17.4 ± 2.66a | 69.4 ± 9.25a | 15.3 ± 0.58a |
iCTRL | 273 | 117 | 42.9b | 156 | 57.1 | 6.2 ± 0.14 | 6.6 ± 0.06bc | 57.1 ± 5.48b | 82.7 ± 6.78a | 16.5 ± 0.27b |
nCTRL | 507 | 92 | 18.1 | 415 | 81.9 | 7.5 ± 0.06 | 6.5 ± 0.04c | 81.9 ± 4.46 | 94.9 ± 1.80a | 17.6 ± 0.10 |
Three dosages of gRNA were injected including low dosage (2.5 ng gRNAs, 7.5 ng Cas9 protein), medium dosage (5 ng gRNAs, 15 ng Cas9 protein) and high dosage (7.5 ng gRNAs, 22.5 ng Cas9 protein). Two control groups included a control that has been injected with the same volume of injection solution (composition: water with up to one third of 0.5% phenol red solution, no gRNA/Cas9 protein) as the treatment groups which was 50 nanoliters for all microinjected embryos (iCTRL). The second control group was not injected (nCTRL). Significant differences for means in the same column are marked with different superscript letters. Log Rank (Mantel-Cox) test was used for pairwise comparisons of embryo mean time to death, mean time to hatch, and mean fry survival time. One-way ANOVA was used to compare hatch percent and fry survival percent for different groups. When the equality of variance assumption was not satisfied, Welch’s test and Games-Howell test were performed. Significance level used for all tests was p = 0.05. Means in the same column with the same superscript letters are not significantly different (p > 0.05).