Table 3.
Real datasets analysis where the inputs of EIM pipeline are the read set and reference genome
| Assembly | Exact | EIM | Bowtie2 |
|---|---|---|---|
| E. coli | |||
| Contigs-500 | 64 | 1 | 11 |
| N50 (kbp) | 1250.9 | 4639.673 | 597.8 |
| Errors | 0 | 2 | 2 |
| Genome-Fraction (%) | 99.995 | 100 | 100 |
| Human chromosome 14 | |||
| Contigs-500 | 27312 | 451 | 1179 |
| N50 (kbp) | 6 | 407.6 | 174.1 |
| Errors | 18 | 44407 | 44911 |
| Genome-Fraction (%) | 93.22 | 99.80 | 99.71 |
The evaluation metrics has been defined in the text. The columns headed ’Exact’, ’EIM’ and ’Bowtie2’ represent the contiguity and quality of contigs constructed by ExactMapping step of EIM, EIM and Bowtie2, respectively