Table 7.
Real dataset analysis where a closely related genome is used as a reference
| Assembly | Exact | EIM (v1) | EIM (v2) | Bowtie2 | MaSuRCA | EIM (v1) + MaSuRCA |
|---|---|---|---|---|---|---|
| Contigs-500 | 497 | 334 | 263 | 259 | 114 | 114 |
| N50 (kbp) | 12.3 | 22.2 | 32 | 29.3 | 106 | 106 |
| Errors | 58 | 618 | 1190 | 2472 | 2407 | 1786 |
| IUPAC-codes | 0 | 17 | 56 | 280 | 0 | 5 |
| Genome-Fraction (%) | 87.013 | 87.811 | 88.578 | 88.575 | 99.058 | 99.058 |
The evaluation metrics has been defined in the text. The columns headed ’Exact’, ’EIM (v1)’, ’EIM (v2)’, ’Bowtie2’, ’MaSuRCA’ and ’EIM (v1) + MaSuRCA’ represent the contiguity and quality of contigs constructed by ExactMapping step of EIM, EIM (v1), EIM (v2), Bowtie2, MaSuRCA and combining the contig sets of EIM (v1) and MaSuRCA assembler, respectively