Table 8.
Evaluating EIM on some eukaryotic datasets
| Assembly | EIM (v2) | Bowtie2 |
|---|---|---|
| Human chromosome 1 | ||
| Contigs-500 | 2497 | 5018 |
| N50 (kbp) | 420.7 | 158.2 |
| Errors | 115381 | 120726 |
| IUPAC-codes | 7862 | 158247 |
| Genome-Fraction (%) | 99.828 | 99.614 |
| Remapped-Reads (%) | 52.02 | 50.95 |
| Human chromosome 10 | ||
| Contigs-500 | 1443 | 2478 |
| N50 (kbp) | 399.9 | 149.2 |
| Errors | 70478 | 73842 |
| IUPAC-codes | 5508 | 112333 |
| Genome-Fraction (%) | 99.209 | 99.034 |
| Remapped-Reads (%) | 51.72 | 49.93 |
| Human chromosome 21 | ||
| Contigs-500 | 1239 | 2362 |
| N50 (kbp) | 237.8 | 101 |
| Errors | 22904 | 23579 |
| IUPAC-codes | 3232 | 46155 |
| Genome-Fraction (%) | 99.114 | 97.73 |
| Remapped-Reads (%) | 44.58 | 42.23 |
| Arabidopsis Thaliana (bur-0) | ||
| Contigs-500 | 6936 | 6987 |
| N50 (kbp) | 428.8 | 417.4 |
| Errors | 136539 | 179312 |
| IUPAC-codes | 4842 | 2370 |
| Genome-Fraction (%) | 98.634 | 98.572 |
| Remapped-Reads (%) | 66.32 | 65.24 |
The evaluation metrics has been defined in the text. The columns headed ’EIM (v2)’ and ’Bowtie2’ represent the contiguity and quality of contigs obtained based on the results of EIM (v2) and Bowtie2, respectively