Table 2. AMOVA results performed on the SNP dataset including clusters with more than 5 samples (Arlequin v3.5).
variation Type | d.f. | Sum of squares | Component Variance | % of variation | fixation indices | P-value |
---|---|---|---|---|---|---|
Among lineages | 1 | 3098.39 | 52.87 | 18.35 | FCT = 0.183 | 0.089 ± 0.010 |
Among clusters within lineage | 4 | 2125.87 | 18.17 | 6.31 | FSC = 0.077 | 0.000 ± 0.000 |
Within Clusters | 126 | 27357.84 | 217.13 | 75.35 | FST = 0.247 | 0.000 ± 0.000 |
Total | 131 | 32582.098 | 288.171 |