Table 1. . Significantly upregulated and downregulated differentially expressed circular RNAs.
| Name | Groups | CircRNAID | Log2FC | Chrom | CircBaseID | Catalog | GeneName | Predicted sequence length |
|---|---|---|---|---|---|---|---|---|
| CircGUCY1A2 | 22RV1 vs RWPE-1 | chr11:106849345|106856857 | 8.40 | chr11 | hsa_circ_0008602 | Exonic | GUCY1A2 | 184 |
| CircETV3 | 22RV1 vs RWPE-1 | chr1:157068933|157104019 | 7.05 | chr1 | Sense overlapping | ETV3 | 35,087 | |
| CircKCNN2 | 22RV1 vs RWPE-1 | chr5:113740135|113740553 | 6.01 | chr5 | Exonic | KCNN2 | 419 | |
| CircMIR663A | 22RV1 vs RWPE-1 | chr20:26189806|26190011 | 6.42 | chr20 | Intronic | MIR663A | 206 | |
| CircBAGE2 | 22RV1 vs RWPE-1 | chr21:11038728|11058323 | 5.79 | chr21 | hsa_circ_0061259 | Exonic | BAGE2 | 1152 |
| CircKRT6A | 22RV1 vs RWPE-1 | chr12:52841323|52881739 | -10.04 | chr12 | Sense overlapping | KRT6A | 40,417 | |
| CircCD276 | 22RV1 vs RWPE-1 | chr15:73995113|73996338 | -7.82 | chr15 | Exonic | CD276 | 654 | |
| CircZFP57 | 22RV1 vs RWPE-1 | chr6:29643163|29643836 | -7.44 | chr6 | Exonic | ZFP57 | 229 | |
| CircPSMA7 | 22RV1 vs RWPE-1 | chr20:60714131|60716000 | -7.36 | chr20 | hsa_circ_0003456 | Exonic | PSMA7 | 375 |
| CircRPPH1 | 22RV1 vs RWPE-1 | chr14:20811283|20811436 | -7.21 | chr14 | hsa_circ_0000512 | Sense overlapping | RPPH1 | 154 |
| CDR1as | PC3 vs RWPE-1 | chrX:139865340|139866824 | 7.55 | chrX | hsa_circ_0001946 | Antisense | CDR1 | 1485 |
| CircDPF3 | PC3 vs RWPE-1 | chr14:73181131|73198642 | 6.97 | chr14 | Exonic | DPF3 | 303 | |
| CircPRKG1 | PC3 vs RWPE-1 | chr10:54048486|54050050 | 6.81 | chr10 | Exonic | PRKG1 | 253 | |
| CircSLCO4A1 | PC3 vs RWPE-1 | chr20:61291764|61292527 | 6.69 | chr20 | Exonic | SLCO4A1 | 234 | |
| CircETV3 | PC3 vs RWPE-1 | chr1:157068933|157104019 | 5.77 | chr1 | Sense overlapping | ETV3 | 35,087 | |
| CircKRT6A | PC3 vs RWPE-1 | chr12:52841323|52881739 | -10.04 | chr12 | Sense overlapping | KRT6A | 40,417 | |
| CircRPPH1 | PC3 vs RWPE-1 | chr14:20811405|20811559 | -7.45 | chr14 | Sense overlapping | RPPH1 | 155 | |
| CircZFP57 | PC3 vs RWPE-1 | chr6:29643163|29643836 | -7.44 | chr6 | Exonic | ZFP57 | 229 | |
| CircEMB | PC3 vs RWPE-1 | chr5:49694941|49707217 | -7.17 | chr5 | hsa_circ_0001481 | Sense overlapping | EMB | 12,277 |
| CircFKBP5 | PC3 vs RWPE-1 | chr6:35586873|35610620 | -7.13 | chr6 | hsa_circ_0001599 | Exonic | FKBP5 | 527 |
| CDR1as | PC3 vs 22RV1 | chrX:139865340|139866824 | 7.55 | chrX | hsa_circ_0001946 | Antisense | CDR1 | 1485 |
| CircASPH | PC3 vs 22RV1 | chr8:62593523|62596747 | 7.39 | chr8 | Sense overlapping | ASPH | 3225 | |
| CircMTCL1 | PC3 vs 22RV1 | chr18:8718422|8720494 | 7.13 | chr18 | hsa_circ_0000825 | Exonic | MTCL1 | 384 |
| CircDPF3 | PC3 vs 22RV1 | chr14:73181131|73198642 | 6.97 | chr14 | Exonic | DPF3 | 303 | |
| CircSLC7A6 | PC3 vs 22RV1 | chr16:68300496|68300624 | 3.13 | chr16 | hsa_circ_0039943 | Exonic | SLC7A6 | 129 |
| CircGUCY1A2 | PC3 vs 22RV1 | chr11:106849345|106856857 | -8.40 | chr11 | hsa_circ_0008602 | Exonic | GUCY1A2 | 184 |
| CircMAN1A2 | PC3 vs 22RV1 | chr1:117944808|117984947 | -6.64 | chr1 | hsa_circ_0000119 | Exonic | MAN1A2 | 648 |
| CircMIR663A | PC3 vs 22RV1 | chr20:26189806|26190011 | -6.42 | chr20 | Intronic | MIR663A | 206 | |
| CircKCNN2 | PC3vs 22RV1 | chr5:113740135|113740553 | -6.01 | chr5 | Exonic | KCNN2 | 419 | |
| CircEMB | PC3 vs 22RV1 | chr5:49694941|49707217 | -5.76 | chr5 | hsa_circ_0001481 | Sense overlapping | EMB | 12,277 |
Name: The names of cirRNAs appearing in this article designated by their host genes; CircRNAID: The ID of the identified circRNA by CIRI (to distinguish from canonical mRNA transcripts, the coordinate positions for each circRNA are connected with a vertical bar ‘|’ instead of a dash ‘-’); Log2FC: Logarithm of the fold change of normalized reads between two groups of samples; Chrom: The chromosome in which the circRNA lies; CircBaseID, the identifier of circBase (www.circbase.org). GeneName: The name of the circRNA-associated gene (best transcript); Catalog: The catalog of the host genes, including ‘exonic’, ‘intronic’, ‘antisense’, ‘intergenic’ and ‘sence overlapping’; Predicted sequence length: The length of predicted circRNA sequence.