Table 2.
Summary of next generation sequencing preprocessing
| Parameter | OTUs | Percentage |
|---|---|---|
| Total number of input sequences | 2,411,541 | 100.0 |
| Remaining sequences after preprocessing and quality filtering | 2,408,208 | 99.9 |
| Total number of sequences assigned to OTUs | 1,851,837 | 76.8 |
| Total number of sequences assigned to taxa | 1,284,409 | 53.3 |
| Copy-number corrected total count | 685,031 | N/A |
| Total number of OTUs | 6957 | 100.0 |
| Number of OTUs assigned to taxa | 4728 | 68.0 |
| Sequences per sample assigned to OTUs | ||
| Min | 99,429 | |
| Max | 432,715 | |
| Median | 144,058 | |
| Mean | 231,479 | |
| Std. dev. | 145,993 |