Table 2.

Read statistics of the reference genome.

Sample	Sample_12p	Sample_13p	Sample_14p	Sample_15P	Sample_16p	Sample_17P
Raw reads	135,067,560	100,031,546	119,844,714	110,990,304	122,657,326	136,969,360
Total reads	101,734,214	76,072,598	82,901,000	82,165,530	88,819,554	93,869,100
Total number of reads mapped	78,625,843 (77.29%)	58,935,848 (77.47%)	62,008,068 (74.80%)	60,455,546 (73.58%)	67,337,265 (75.81%)	69,827,122 (74.39%)
Number of reads that mapped to multiple regions	3,792,793 (3.73%)	2,606,663 (3.43%)	3,322,008 (4.01%)	3,470,863 (4.22%)	3,937,078 (4.43%)	3,997,927 (4.26%)
Number of reads that were mapped to unique regions	74,833,050 (73.56%)	56,329,185 (74.05%)	58,686,060 (70.79%)	56,984,683 (69.35%)	63,400,187 (71.38%)	65,829,195 (70.13%)
Read-1	38,037,308 (37.39%)	286,21,024 (37.62%)	29,752,817 (35.89%)	28,436,715 (34.61%)	32,177,909 (36.23%)	33,403,729 (35.59%)
Read-2	36,795,742 (36.17%)	27,708,161 (36.42%)	28,933,243 (34.90%)	28,547,968 (34.74%)	31,222,278 (35.15%)	32,425,466 (34.54%)
Number of reads that map to ‘+’	37,435,639 (36.80%)	28,177,639 (37.04%)	29,369,825 (35.43%)	28,554,241 (34.75%)	31,731,741 (35.73%)	32,953,615 (35.11%)
Number of reads map to ‘−’	37,397,411 (36.76%)	28,151,546 (37.01%)	29,16,235 (35.36%)	28,430,442 (34.60%)	31,668,446 (35.65%)	32,875,580 (35.02%)
Number of non-splice reads	65,956,768 (64.83%)	50,126,819 (65.89%)	50,492,679 (60.91%)	48,280,120 (58.76%)	54,077,425 (60.88%)	56,555,536 (60.25%)
Number of splice reads	8,876,282 (8.72%)	6,202,366 (8.15%)	8,193,381 (9.88%)	8,704,563 (10.59%)	9,322,762 (10.50%)	9,273659 (9.88%)
Number of reads mapped in proper pairs	66,749,602 (65.61%)	50,161,962 (65.94%)	51,970,094 (62.69%)	51,198,774 (62.31%)	56,791,332 (63.94%)	58,971,888 (62.82%)