Antibodies |
|
Rabbit anti-ZWILCH |
Andrea Musacchio, MPI of Molecular Physiology, Dortmund, Germany |
N/A |
Mouse anti-ZWILCH |
Andrea Musacchio |
N/A |
Rabbit anti-ZW10 |
Andrea Musacchio |
N/A |
Rabbit anti-BUB-1 |
Arshad Desai, University of California San Diego, La Jolla, CA, USA |
OD31 |
Rabbit anti-mCherry |
Arshad Desai |
OD78 |
Rabbit anti-DSN1 |
Arshad Desai |
OD110 |
Rabbit anti-KNL-1 |
Arshad Desai |
OD33 |
Rabbit anti-KNL1/CASC5 |
Arshad Desai |
OD111 |
Rabbit anti-ROD-1 |
Arshad Desai |
OD216 |
Rabbit anti-SPDL-1 |
Arshad Desai |
OD164 |
Rabbit anti-SPDL1/CCDC99 |
Arshad Desai |
OD157 |
Rabbit anti-SPDL1/CCDC99 |
Arshad Desai |
OD174 |
Rabbit anti-ZWL-1 |
Arshad Desai |
OD85 |
Sheep anti-BUB3 |
Stephen Taylor, University of Manchester, UK |
N/A |
Sheep anti-BUBR1 |
Stephen Taylor |
N/A |
Sheep anti-CENP-F |
Stephen Taylor |
N/A |
Goat anti-GFP |
Anthony Hyman, Max Planck Institute of Molecular Cell Biology & Genetics, Dresden, Germany |
N/A |
Mouse anti-α-Tubulin (DM1α) |
Sigma-Aldrich |
Cat No.: T6199; RRID: AB_477583
|
Mouse anti-α-Tubulin (clone B512) |
Sigma-Aldrich |
Cat No.: T5168; RRID: AB_477579
|
Mouse anti-BUB1 |
Abcam |
Cat No.: ab54893; RRID: AB_940664
|
Guinea pig anti-CENP-C |
MBL |
Cat No.: PD030; RRID: AB_10693556
|
Mouse anti-CENP-E (clone1H12) |
Abcam |
Cat No.: ab5093; RRID: AB_304747
|
Human anti-centromere antibodies (ACA) |
Antibodies Incorporated |
Cat No.: 15-234-0001; RRID: AB_2687472
|
Mouse anti-FLAG M2 |
Sigma-Aldrich |
Cat No.: F1804; RRID: AB_262044
|
Mouse anti-GFP (clone 9F9.F9) |
Abcam |
Cat No.: ab1218; RRID: AB_298911
|
Mouse anti-HEC1 (clone 9G3) |
Abcam |
Cat No.: ab3613: RRID: AB_303949
|
Mouse anti-MAD1 (clone BB3-8) |
Millipore |
Cat No.: MABE867/6B7115 |
Mouse anti-MAD2 |
Santa Cruz Biotechnology |
Cat No.: sc-65492; RRID: AB_831526
|
Mouse anti-nuclear pore complex antibody (clone Mab414) |
Abcam |
Cat No.: ab24609; RRID: AB_448181
|
Mouse anti-p150/DCTN1 |
BD Transduction Laboratories |
Cat No.: 610473; RRID: AB_397845
|
Rabbit anti-ROD/KNTC1 |
[15] |
GC7 |
Donkey anti-goat IgG, Alexa 488 conjugate |
Jackson ImmunoResearch |
Cat No.: 705-545-147; RRID: AB_2336933
|
Donkey anti-guinea pig IgG, Alexa 647 conjugate |
Jackson ImmunoResearch |
Cat No.: 706-605-148; RRID: AB_2340476
|
Donkey anti-mouse IgG, Alexa 488 conjugate |
Jackson ImmunoResearch |
Cat No.: 715-545-150; RRID: AB_2340846
|
Donkey anti-mouse IgG, Alexa 594 conjugate |
Jackson ImmunoResearch |
Cat No.: 715-585-150; RRID: AB_2340854
|
Donkey anti-mouse IgG, Alexa 647 conjugate |
Jackson ImmunoResearch |
Cat No.: 715-605-150; RRID: AB_2340862
|
Donkey anti-rabbit IgG, Alexa 488 conjugate |
Jackson ImmunoResearch |
Cat No.: 711-545-152; RRID: AB_2313584
|
Donkey anti-rabbit IgG, Alexa 594 conjugate |
Jackson ImmunoResearch |
Cat No.: 711-585-152; RRID: AB_2340621
|
Donkey anti-sheep IgG, Alexa 488 conjugate |
Jackson ImmunoResearch |
Cat No.: 713-545-147; RRID: AB_2340745
|
Bovine anti-goat IgG HRP |
Jackson ImmunoResearch |
Cat No.: 805-035-180; RRID: AB_2340874
|
Goat anti-mouse IgG HRP |
Jackson ImmunoResearch |
Cat No.: 115-035-003; RRID: AB_10015289
|
Goat anti-rabbit IgG HRP |
Jackson ImmunoResearch |
Cat No.: 111-035-003; RRID: AB_2313567
|
|
Bacterial and Virus Strains |
|
DH5alpha Chemically Competent E. coli
|
Thermo Fisher Scientific |
Cat No.: 18265017 |
DH10EMBacY |
Geneva Biotech |
N/A |
TOP10 Chemically Competent E. coli
|
Thermo Fisher Scientific |
Cat No.: C404010 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
RO-3306 |
Sigma-Aldrich |
Cat No.: SML0569 |
Dulbecco's modified Eagle's medium |
Gibco |
Cat No.: 31966021 |
EDTA-free Complete Protease Inhibitor Cocktail |
Roche |
Cat No.: 11873580001 |
Fetal bovine serum |
Gibco |
Cat No.: 10500064 |
FuGENE 6 transfection reagent |
Promega |
Cat No.: E2691 |
GlutaMAX |
Gibco |
Cat No.: 35050038 |
HIS-Select Nickel Affinity Gel beads |
Sigma-Aldrich |
Cat No.: P6611-25ML |
Hygromycin B |
Life Technologies |
Cat No.: LTI 10687-010 |
IgG-free BSA |
Jackson ImmunoResearch |
Cat No.: 001-000-161 |
Nocodazole |
Sigma-Aldrich |
Cat No.: M1404-2MG |
Oligofectamine |
Invitrogen |
Cat No.: 12252-011 |
Opti-MEM |
Gibco |
Cat No.: 31985047 |
Pierce ECL Western Blotting Substrate |
Thermo Fisher Scientific |
Cat No.: 32106 |
Prolong Gold with DAPI stain |
Invitrogen |
Cat No.: P36930
|
SFM4 medium |
Hyclone |
Cat No.: SH30913.02 |
Strep-Tactin, Oyster 645 conjugate |
IBA |
Cat No.: 2-1553-050 |
X-tremeGene HP DNA Transfection Reagent |
Roche |
Cat No.: 000000006366244001 |
|
Critical Commercial Assays |
|
MEGAscript T3 |
Invitrogen |
Cat No.: AM1338M |
MEGAscript T7 |
Invitrogen |
Cat No.: AM1334 |
NucleoSpin Gel and PCR Clean-up |
Macherey-Nagel |
Cat No.: 1197-2372 |
Nucleospin Plasmid Miniprep Kit |
Macherey-Nagel |
Cat No.: 1235-3358 |
|
Experimental Models: Cell Lines |
|
HeLa Flp-In T-Rex |
Stephen Taylor |
N/A |
HeLa FRT-TO MYC::EGFP::TEV::S-peptide:: ROD/KNTC1(1-2209) |
[15] |
N/A |
HeLa FRT-TO MYC::EGFP::TEV::S-peptide:: ROD/KNTC1(376-2209) |
[15] |
N/A |
HeLa FRT-TO MYC::EGFP::TEV::S-peptide::ZWILCH |
this study |
N/A |
HeLa FRT-TO MYC::EGFP::TEV::S-peptide::ZWILCH(E422A/D426A) |
this study |
N/A |
Sf21 insect cells |
Thermo Fisher Scientific |
Cat No.: 11497013 |
|
Experimental Models: Organisms/Strains |
|
C. elegans strain N2: wild-type (ancestral N2 Bristol) |
Caenorhabditis Genetics Center (CGC), University of Minnesota, MN, USA |
WB strain: N2 (ancestral) |
C. elegans strain GCP24: unc-119(ed3) III; ruIs32[pAZ132; Ppie-1::GFP::his-58; unc-119(+)] III; ddIs6[Ppie-1::GFP::tbg-1; unc-119(+)] V; ltSi426[pDC192; Prod-1::mCherry::rod-1::rod-1 3’UTR; cb-unc-119(+)] II
|
[15] |
GCP24 |
C. elegans strain GCP287: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III
|
this study |
GCP287 |
C. elegans strain GCP303: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III?; ruIs32[pAZ132; Ppie-1::GFP::his-58; cb-unc-119(+)] III; ddIs6[Ppie- 1::GFP::tbg-1; cb-unc-119(+)] V
|
this study |
GCP303 |
C. elegans strain GCP529: rod-1(lt62[gfp::rod-1]) IV; ltIs122[pAA64; Ppie-1::mCherry::his-58; cb-unc-119(+)]; unc-119(ed3) III
|
this study |
GCP529 |
C. elegans strain GCP539: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III; czw1[prt78(3xflag::czw-1)] IV
|
this study |
GCP539 |
C. elegans strain GCP736: prtSi141[pRG972; Prod-1::3xflag::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3)] III
|
this study |
GCP736 |
C. elegans strain OD347: ltSi4[pOD833; Phcp-3::gfp::hcp-3::hcp-3 3’UTR; cb-unc-119(+)] II; hcp-3(ok1892) III
|
Arshad Desai |
OD347 |
C. elegans strain OD933: ltSi426[pDC192;Prod-1::mCherry::rod-1::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III
|
[15] |
OD933 |
C. elegans strain OD3367: rod-1(lt62[gfp::rod-1]) IV
|
this study |
OD3367 |
|
Oligonucleotides |
|
siRNA targeting ROD/KNTC1: GUAAAUAACUUGCGAGAGU |
Dharmacon |
Cat No.: J-006829-05-0020 |
siRNA targeting SPDL1/CCDC99: GAAAGGGUCUCAAACUGAA |
Dharmacon |
Cat No.: LU-016970-00-0005 |
siRNA targeting ZWILCH: GGUAAGAUGUGACAGUUCA |
Dharmacon |
Cat No.: J-019377-05-0005 |
Pool of 4 siRNAs targeting DCTN1: CUGGAGCGCUGUAUCGUAA GAAGAUCGAGAGACAGUUA GCUCAUGCCUCGUCUCAUU CGAGCUCACUACUGACUUA |
Dharmacon |
Cat No.: L-012874-00-0005 |
Pool of 4 siRNAs targeting KNL1/CASC5: GCAUGUAUCUCUUAAGGAA GAACGUGGGUACAAGAAGA CGAGUCAGCUUUGCAGAUA GCAAAUGACAGCCAGCUAA |
Dharmacon |
Cat No.: L-015673-00-0005 |
Control siRNA targeting Luciferase: CGUACGCGGAAUACUUCGA |
Dharmacon |
Cat No.: D-001100-01-20 |
Primers used for the production of dsRNA are listed in Table S1
|
this study |
N/A |
|
Recombinant DNA |
|
Plasmid pCFJ90: Pmyo-2::mCherry::unc-54utr |
Addgene |
Cat No.: 19327 |
Plasmid pCFJ104: Pmyo-3::mCherry::unc-54utr |
Addgene |
Cat No.: 19328 |
Plasmid pGH8: Prab-3::mCherry::unc-54utr |
Addgene |
Cat No.: 19359 |
Plasmid pCFJ601: Peft-3::Mos1 transposase |
Addgene |
Cat No.: 34874 |
Plasmid pRG387: pcDNA5/FRT/TO-MYC::EGFP::TEV::S-peptide::ZWILCH |
this study |
pRG387 |
Plasmid pRG395: pcDNA5/FRT/TO-MYC::EGFP::TEV::S-peptide::ZWILCH(E422A/D426A) |
this study |
pRG395 |
Plasmid pRG442: pACEBac1-zwl-1 |
[15] |
pRG442 |
Plasmid pRG445 : pACEBac1-6xHis::TEV::rod-1(1-2177) |
this study |
pRG445 |
Plasmid pRG499: pCFJ151-Prod-1::mCherry::rod-1(373-2177)::rod-1utr |
this study |
pRG499 |
Plasmid pRG516: pACEBac1-6xHis::TEV::rod-1(373-2177) |
this study |
pRG516 |
Plasmid pRG705: pACEBac1-6xHis::TEV::GFP::rod-1(1-2177) |
this study |
pRG705 |
Plasmid pRG706: pACEBac1-6xHis::TEV::GFP::rod-1(373-2177) |
this study |
pRG706 |
Plasmid pRG733: pACEBac1-StrepTagII::czw-1 |
this study |
pRG733 |
Plasmid pRG972: pCFJ151-Prod-1::3xflag::rod-1(373-2177)::rod-1utr |
this study |
pRG972 |
Plasmid pL4440_DEST for RNAi of T01H3.4 (perm-1) by bacterial feeding |
Ahringer RNAi Collection, Source BioScience |
Cat No.: DFCIp3320H0210027D |
Plasmid pOG44: Flp-recombinase expression vector |
Thermo Fisher Scientific |
Cat No.: V600520 |
|
Software and Algorithms |
|
Andor iQ3 |
Andor Technology |
https://andor.oxinst.com |
FIJI (Image J version 2.0.0-rc-56/1.51h) |
[50] |
https://fiji.sc |
Prism 7.0 |
GraphPad Software |
https://www.graphpad.com |
ZEN 2.3 (blue edition) |
Zeiss |
https://www.zeiss.com |