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. 2018 Nov 5;28(21):3408–3421.e8. doi: 10.1016/j.cub.2018.08.056
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit anti-ZWILCH Andrea Musacchio, MPI of Molecular Physiology, Dortmund, Germany N/A
Mouse anti-ZWILCH Andrea Musacchio N/A
Rabbit anti-ZW10 Andrea Musacchio N/A
Rabbit anti-BUB-1 Arshad Desai, University of California San Diego, La Jolla, CA, USA OD31
Rabbit anti-mCherry Arshad Desai OD78
Rabbit anti-DSN1 Arshad Desai OD110
Rabbit anti-KNL-1 Arshad Desai OD33
Rabbit anti-KNL1/CASC5 Arshad Desai OD111
Rabbit anti-ROD-1 Arshad Desai OD216
Rabbit anti-SPDL-1 Arshad Desai OD164
Rabbit anti-SPDL1/CCDC99 Arshad Desai OD157
Rabbit anti-SPDL1/CCDC99 Arshad Desai OD174
Rabbit anti-ZWL-1 Arshad Desai OD85
Sheep anti-BUB3 Stephen Taylor, University of Manchester, UK N/A
Sheep anti-BUBR1 Stephen Taylor N/A
Sheep anti-CENP-F Stephen Taylor N/A
Goat anti-GFP Anthony Hyman, Max Planck Institute of Molecular Cell Biology & Genetics, Dresden, Germany N/A
Mouse anti-α-Tubulin (DM1α) Sigma-Aldrich Cat No.: T6199; RRID: AB_477583
Mouse anti-α-Tubulin (clone B512) Sigma-Aldrich Cat No.: T5168; RRID: AB_477579
Mouse anti-BUB1 Abcam Cat No.: ab54893; RRID: AB_940664
Guinea pig anti-CENP-C MBL Cat No.: PD030; RRID: AB_10693556
Mouse anti-CENP-E (clone1H12) Abcam Cat No.: ab5093; RRID: AB_304747
Human anti-centromere antibodies (ACA) Antibodies Incorporated Cat No.: 15-234-0001; RRID: AB_2687472
Mouse anti-FLAG M2 Sigma-Aldrich Cat No.: F1804; RRID: AB_262044
Mouse anti-GFP (clone 9F9.F9) Abcam Cat No.: ab1218; RRID: AB_298911
Mouse anti-HEC1 (clone 9G3) Abcam Cat No.: ab3613: RRID: AB_303949
Mouse anti-MAD1 (clone BB3-8) Millipore Cat No.: MABE867/6B7115
Mouse anti-MAD2 Santa Cruz Biotechnology Cat No.: sc-65492; RRID: AB_831526
Mouse anti-nuclear pore complex antibody (clone Mab414) Abcam Cat No.: ab24609; RRID: AB_448181
Mouse anti-p150/DCTN1 BD Transduction Laboratories Cat No.: 610473; RRID: AB_397845
Rabbit anti-ROD/KNTC1 [15] GC7
Donkey anti-goat IgG, Alexa 488 conjugate Jackson ImmunoResearch Cat No.: 705-545-147; RRID: AB_2336933
Donkey anti-guinea pig IgG, Alexa 647 conjugate Jackson ImmunoResearch Cat No.: 706-605-148; RRID: AB_2340476
Donkey anti-mouse IgG, Alexa 488 conjugate Jackson ImmunoResearch Cat No.: 715-545-150; RRID: AB_2340846
Donkey anti-mouse IgG, Alexa 594 conjugate Jackson ImmunoResearch Cat No.: 715-585-150; RRID: AB_2340854
Donkey anti-mouse IgG, Alexa 647 conjugate Jackson ImmunoResearch Cat No.: 715-605-150; RRID: AB_2340862
Donkey anti-rabbit IgG, Alexa 488 conjugate Jackson ImmunoResearch Cat No.: 711-545-152; RRID: AB_2313584
Donkey anti-rabbit IgG, Alexa 594 conjugate Jackson ImmunoResearch Cat No.: 711-585-152; RRID: AB_2340621
Donkey anti-sheep IgG, Alexa 488 conjugate Jackson ImmunoResearch Cat No.: 713-545-147; RRID: AB_2340745
Bovine anti-goat IgG HRP Jackson ImmunoResearch Cat No.: 805-035-180; RRID: AB_2340874
Goat anti-mouse IgG HRP Jackson ImmunoResearch Cat No.: 115-035-003; RRID: AB_10015289
Goat anti-rabbit IgG HRP Jackson ImmunoResearch Cat No.: 111-035-003; RRID: AB_2313567

Bacterial and Virus Strains

DH5alpha Chemically Competent E. coli Thermo Fisher Scientific Cat No.: 18265017
DH10EMBacY Geneva Biotech N/A
TOP10 Chemically Competent E. coli Thermo Fisher Scientific Cat No.: C404010

Chemicals, Peptides, and Recombinant Proteins

RO-3306 Sigma-Aldrich Cat No.: SML0569
Dulbecco's modified Eagle's medium Gibco Cat No.: 31966021
EDTA-free Complete Protease Inhibitor Cocktail Roche Cat No.: 11873580001
Fetal bovine serum Gibco Cat No.: 10500064
FuGENE 6 transfection reagent Promega Cat No.: E2691
GlutaMAX Gibco Cat No.: 35050038
HIS-Select Nickel Affinity Gel beads Sigma-Aldrich Cat No.: P6611-25ML
Hygromycin B Life Technologies Cat No.: LTI 10687-010
IgG-free BSA Jackson ImmunoResearch Cat No.: 001-000-161
Nocodazole Sigma-Aldrich Cat No.: M1404-2MG
Oligofectamine Invitrogen Cat No.: 12252-011
Opti-MEM Gibco Cat No.: 31985047
Pierce ECL Western Blotting Substrate Thermo Fisher Scientific Cat No.: 32106
Prolong Gold with DAPI stain Invitrogen Cat No.: P36930
SFM4 medium Hyclone Cat No.: SH30913.02
Strep-Tactin, Oyster 645 conjugate IBA Cat No.: 2-1553-050
X-tremeGene HP DNA Transfection Reagent Roche Cat No.: 000000006366244001

Critical Commercial Assays

MEGAscript T3 Invitrogen Cat No.: AM1338M
MEGAscript T7 Invitrogen Cat No.: AM1334
NucleoSpin Gel and PCR Clean-up Macherey-Nagel Cat No.: 1197-2372
Nucleospin Plasmid Miniprep Kit Macherey-Nagel Cat No.: 1235-3358

Experimental Models: Cell Lines

HeLa Flp-In T-Rex Stephen Taylor N/A
HeLa FRT-TO MYC::EGFP::TEV::S-peptide:: ROD/KNTC1(1-2209) [15] N/A
HeLa FRT-TO MYC::EGFP::TEV::S-peptide:: ROD/KNTC1(376-2209) [15] N/A
HeLa FRT-TO MYC::EGFP::TEV::S-peptide::ZWILCH this study N/A
HeLa FRT-TO MYC::EGFP::TEV::S-peptide::ZWILCH(E422A/D426A) this study N/A
Sf21 insect cells Thermo Fisher Scientific Cat No.: 11497013

Experimental Models: Organisms/Strains

C. elegans strain N2: wild-type (ancestral N2 Bristol) Caenorhabditis Genetics Center (CGC), University of Minnesota, MN, USA WB strain: N2 (ancestral)
C. elegans strain GCP24: unc-119(ed3) III; ruIs32[pAZ132; Ppie-1::GFP::his-58; unc-119(+)] III; ddIs6[Ppie-1::GFP::tbg-1; unc-119(+)] V; ltSi426[pDC192; Prod-1::mCherry::rod-1::rod-1 3’UTR; cb-unc-119(+)] II [15] GCP24
C. elegans strain GCP287: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III this study GCP287
C. elegans strain GCP303: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III?; ruIs32[pAZ132; Ppie-1::GFP::his-58; cb-unc-119(+)] III; ddIs6[Ppie- 1::GFP::tbg-1; cb-unc-119(+)] V this study GCP303
C. elegans strain GCP529: rod-1(lt62[gfp::rod-1]) IV; ltIs122[pAA64; Ppie-1::mCherry::his-58; cb-unc-119(+)]; unc-119(ed3) III this study GCP529
C. elegans strain GCP539: prtSi103[pRG499; Prod-1::mCherry::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III; czw1[prt78(3xflag::czw-1)] IV this study GCP539
C. elegans strain GCP736: prtSi141[pRG972; Prod-1::3xflag::rod-1(373-2177)::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3)] III this study GCP736
C. elegans strain OD347: ltSi4[pOD833; Phcp-3::gfp::hcp-3::hcp-3 3’UTR; cb-unc-119(+)] II; hcp-3(ok1892) III Arshad Desai OD347
C. elegans strain OD933: ltSi426[pDC192;Prod-1::mCherry::rod-1::rod-1 3’UTR; cb-unc-119(+)] II; unc-119(ed3) III [15] OD933
C. elegans strain OD3367: rod-1(lt62[gfp::rod-1]) IV this study OD3367

Oligonucleotides

siRNA targeting ROD/KNTC1: GUAAAUAACUUGCGAGAGU Dharmacon Cat No.: J-006829-05-0020
siRNA targeting SPDL1/CCDC99: GAAAGGGUCUCAAACUGAA Dharmacon Cat No.: LU-016970-00-0005
siRNA targeting ZWILCH: GGUAAGAUGUGACAGUUCA Dharmacon Cat No.: J-019377-05-0005
Pool of 4 siRNAs targeting DCTN1: CUGGAGCGCUGUAUCGUAA GAAGAUCGAGAGACAGUUA GCUCAUGCCUCGUCUCAUU CGAGCUCACUACUGACUUA Dharmacon Cat No.: L-012874-00-0005
Pool of 4 siRNAs targeting KNL1/CASC5: GCAUGUAUCUCUUAAGGAA GAACGUGGGUACAAGAAGA CGAGUCAGCUUUGCAGAUA GCAAAUGACAGCCAGCUAA Dharmacon Cat No.: L-015673-00-0005
Control siRNA targeting Luciferase: CGUACGCGGAAUACUUCGA Dharmacon Cat No.: D-001100-01-20
Primers used for the production of dsRNA are listed in Table S1 this study N/A

Recombinant DNA

Plasmid pCFJ90: Pmyo-2::mCherry::unc-54utr Addgene Cat No.: 19327
Plasmid pCFJ104: Pmyo-3::mCherry::unc-54utr Addgene Cat No.: 19328
Plasmid pGH8: Prab-3::mCherry::unc-54utr Addgene Cat No.: 19359
Plasmid pCFJ601: Peft-3::Mos1 transposase Addgene Cat No.: 34874
Plasmid pRG387: pcDNA5/FRT/TO-MYC::EGFP::TEV::S-peptide::ZWILCH this study pRG387
Plasmid pRG395: pcDNA5/FRT/TO-MYC::EGFP::TEV::S-peptide::ZWILCH(E422A/D426A) this study pRG395
Plasmid pRG442: pACEBac1-zwl-1 [15] pRG442
Plasmid pRG445 : pACEBac1-6xHis::TEV::rod-1(1-2177) this study pRG445
Plasmid pRG499: pCFJ151-Prod-1::mCherry::rod-1(373-2177)::rod-1utr this study pRG499
Plasmid pRG516: pACEBac1-6xHis::TEV::rod-1(373-2177) this study pRG516
Plasmid pRG705: pACEBac1-6xHis::TEV::GFP::rod-1(1-2177) this study pRG705
Plasmid pRG706: pACEBac1-6xHis::TEV::GFP::rod-1(373-2177) this study pRG706
Plasmid pRG733: pACEBac1-StrepTagII::czw-1 this study pRG733
Plasmid pRG972: pCFJ151-Prod-1::3xflag::rod-1(373-2177)::rod-1utr this study pRG972
Plasmid pL4440_DEST for RNAi of T01H3.4 (perm-1) by bacterial feeding Ahringer RNAi Collection, Source BioScience Cat No.: DFCIp3320H0210027D
Plasmid pOG44: Flp-recombinase expression vector Thermo Fisher Scientific Cat No.: V600520

Software and Algorithms

Andor iQ3 Andor Technology https://andor.oxinst.com
FIJI (Image J version 2.0.0-rc-56/1.51h) [50] https://fiji.sc
Prism 7.0 GraphPad Software https://www.graphpad.com
ZEN 2.3 (blue edition) Zeiss https://www.zeiss.com