Table 4.
Characteristics of 20 SSR loci designed from an EST library of C. debaoensis.
| Locus | Primer sequence (5′–3′) | Repeat motif | product size (bp) | Ta (° C) | GenBank Accession No. |
|---|---|---|---|---|---|
| Cdb01 | F:CGCCCCATTTTAGATCTCTC R:AAACGATGTGAGCCAAAACC |
(TC)6 | 155 | 55 | JZ918061 |
| Cdb02 | F:CAATGCCAACGCTGTGTCTA R:CCCTCAACCTGCAATTTCTC |
(CAT)9 | 222 | 57 | JZ918389 |
| Cdb04 | F:TTGCACCTGCCATTAGTCAA R:TGATCGGTCTCAACAGGTAATG |
(AATA)5 | 196 | 55 | JZ918792 |
| Cdb05 | F:TTGCACCTGCCATTAGTCAA R:TGATCGGTCTCAACAGGTAATG |
(AATA)5 | 196 | 55 | JZ919036 |
| Cdb07 | F:ATCCAAGCTAAAGGGTTCGG R:TGAACTGCTGCTGCTATAAAAA |
(TGA)5 | 141 | 55 | JZ919105 |
| Cdb08 | F:CGACTGATCTCGTCCCAAAT R:AGACATAATCCGCCACGAAG |
(GA)6 | 221 | 57 | JZ920586 |
| Cdb09 | F:AAATCCAAGCCAAAGGGTTC R:CCCCCAACAACAACTGAACT |
(TGA)5 | 157 | 55 | JZ921520 |
| Cdb11 | F:TTGCACCTGCCATTAGTCAA R:TGATCGGTCTCAACAGGTAATG |
(AATA)5 | 196 | 55 | JZ921918 |
| Cdb12 | F:CCTGTACCAGGGACGAAGAA R:CCCTCAACCTGCAATTTCTC |
(CAT)8 | 273 | 57 | JZ922529 |
| Cdb13 | F:CGGACCCTCAATGTGTCTTT R:CAGCAGCCAAATGAGCACTA |
(CT)6 | 163 | 57 | JZ920486 |
| Cdb18 | F:ATTGTATATGCAGCAGCCCC R:CAAGACCACGCGTTGAGATA |
(GCA)6 | 265 | 57 | JZ920178 |
| Cdb19 | F:ATTGTATATGCAGCAGCCCC R:CAAGACCACGCGTTGAGATA |
(CCT)7 | 265 | 57 | JZ920178 |
| Cdb33 | F:AAGTTCCGTGCCAACCATAA R:GATCTGCTGCCTTCACCTTC |
(ATA)5 | 164 | 55 | JZ918520 |
| Cdb45 | F:TGGATTCATGAGCATTGGAA R:TAATGCAAACAGGGCAATGA |
(CAT)5 | 148 | 53 | JZ920472 |
| Cdb48 | F:AAGCCAAAAAGGGCAAGATT R:CTTCTACTTCGCCCCTCCTT |
(CAA)5 | 186 | 53 | JZ921258 |
| Cdb50 | F:TACTTACAGCAGGGGGAAGG R:CACATGACAGAGGTCTAGTGGG |
(TATG)5 | 263 | 59 | JZ921416 |
| Cdb53 | F:TCTGTAGCGAGTTTGGGGTT R:CCGCTAAGATTGCCACATTT |
(TAT)6 | 255 | 55 | JZ921726 |
| Cdb54 | F:TACATCAGGCAATGGCAAAA R:TGCAAACTCCAATAATTCAAGAGA |
(AT)7 | 259 | 53 | JZ922036 |
| Cdb55 | F:CCTCCGAGGAACACAAACAT R:ATATCGCCCTCGCTCCTAAT |
(AAG)7 | 241 | 57 | JZ922127 |
| Cdb56 | F:ATCGGTCTCAACTTGGATGC R:CGTCGTTCTCCCGAGTTTTA |
(TC)10 | 261 | 57 | JZ922158 |