Table 2.
List of genes encoded by the four Sanguisorba chloroplast genomes.
| Category | Group | Name |
|---|---|---|
| Self-replication | rRNA genes | rrn4.5a, rrn5a, rrn16a, rrn23a |
| tRNA genes | trnA-UGC *,a, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC *, trnH-GUG, trnI-CAU a | |
| trnI-GAU *,a, trnK-UUU *, trnL-CAA a, trnL-UAA *, trnL-UAG, trnM-CAU, trnN-GUU a, trnP-UGG, trnQ-UUG, trnR-ACG a, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC a, trnV-UAC *, trnW-CCA, trnY-GUA | ||
| Small subunit of ribosome | rps2, rps3, rps4, rps7a, rps8, rps11, rps12 **,a, rps14 rps15, rps16 *, rps18, rps19 | |
| Large subunit of ribosome | rpl2 *,a, rpl14, rpl16 *, rpl20, rpl22, rpl23 a, rpl32, rpl33, rpl36 | |
| DNA dependent RNA polymerase | rpoA, rpoB, rpoC1 *, rpoC2 | |
| Genes for phytosynthesis | Subunits of NADH-dehydrogenase | ndhA *, ndhB *,a, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH ndhI, ndhJ, ndhK |
| Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ | |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of cytochrome b/f complex | petA, petB *, petD *, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF, atpH, atpl | |
| Large subunit of RuBisCO | rbcL | |
| Other genes | Maturase | matK |
| Envelope membrane protein | cemA | |
| Subunit of Acetyl-CoA-carboxylase | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Protease | clpP ** | |
| Genes of unknown function | Open Reading Frames (ORF, ycf) | ycf1, ycf2a, ycf3 **, ycf4 |
| Pseudo genes | ycf1, infA |
* Gene with one intron, ** Gene with two introns, a Gene with two copies.