Table 3.
The number of SNPs and indels detected in each transcript-read pairing of 12 Ae. umbellulata accessions
| Transcript model | Read | total NR SNPs and indels | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KU- 4017 |
KU- 4026 |
KU- 4035 |
KU- 4043 |
KU- 4052 |
KU- 4103 |
KU- 5934 |
KU- 5954 |
KU- 12,180 |
KU- 12,198 |
KU- 8–5 |
KU- 8–7 |
||
| KU- | 2925 | 16,611 | 11,171 | 12,091 | 5316 | 24,975 | 14,064 | 29,726 | 23,244 | 13,400 | 24,601 | 85,758 | |
| 4017 | 77 | 524 | 348 | 381 | 169 | 854 | 401 | 869 | 648 | 443 | 846 | 3284 | |
| KU- | 10,754 | 16,535 | 11,666 | 12,869 | 5428 | 19,463 | 11,889 | 23,915 | 17,452 | 11,478 | 20,185 | 63,233 | |
| 4026 | 350 | 612 | 429 | 420 | 153 | 762 | 405 | 787 | 565 | 412 | 754 | 2645 | |
| KU- | 9069 | 3639 | 11,969 | 13,141 | 5372 | 25,450 | 14,991 | 30,925 | 23,575 | 13,356 | 25,797 | 89,369 | |
| 4035 | 274 | 94 | 426 | 423 | 167 | 889 | 387 | 901 | 651 | 396 | 847 | 3303 | |
| KU- | 9748 | 2959 | 17,571 | 11,772 | 5325 | 24,871 | 15,017 | 30,191 | 22,942 | 13,557 | 26,117 | 85,656 | |
| 4043 | 287 | 83 | 611 | 404 | 155 | 867 | 423 | 883 | 662 | 459 | 809 | 3398 | |
| KU- | 10,355 | 3393 | 20,370 | 11,585 | 5172 | 25,332 | 14,713 | 30,020 | 23,340 | 14,824 | 26,197 | 88,716 | |
| 4052 | 347 | 92 | 665 | 408 | 153 | 848 | 406 | 951 | 716 | 493 | 872 | 3525 | |
| KU- | 11,611 | 3811 | 19,020 | 13,758 | 13,022 | 21,807 | 13,405 | 25,741 | 19,851 | 14,038 | 21,764 | 71,071 | |
| 4103 | 348 | 99 | 672 | 462 | 429 | 827 | 417 | 786 | 605 | 474 | 732 | 2932 | |
| KU- | 14,265 | 3465 | 25,574 | 16,432 | 16,766 | 6131 | 13,619 | 31,109 | 23,359 | 15,968 | 25,591 | 89,344 | |
| 5934 | 443 | 97 | 854 | 582 | 527 | 187 | 385 | 932 | 663 | 540 | 855 | 3489 | |
| KU- | 15,032 | 3585 | 28,423 | 18,003 | 18,391 | 6424 | 25,505 | 30,219 | 22,205 | 17,868 | 25,394 | 91,059 | |
| 5954 | 433 | 89 | 909 | 572 | 560 | 174 | 859 | 942 | 650 | 563 | 872 | 3723 | |
| KU- | 24,232 | 6057 | 44,751 | 27,569 | 29,176 | 9695 | 42,984 | 27,022 | 24,142 | 30,721 | 34,445 | 99,411 | |
| 12,180 | 698 | 163 | 1389 | 901 | 896 | 296 | 1384 | 768 | 719 | 935 | 1140 | 4246 | |
| KU- | 21,096 | 5282 | 40,683 | 24,658 | 25,784 | 9259 | 39,208 | 22,641 | 26,570 | 27,036 | 31,815 | 100,683 | |
| 12,198 | 614 | 117 | 1311 | 777 | 805 | 246 | 1263 | 627 | 809 | 813 | 1022 | 4085 | |
| KU- | 12,822 | 3444 | 23,775 | 15,520 | 16,626 | 5893 | 24,993 | 15,271 | 30,526 | 23,495 | 25,746 | 91,080 | |
| 8–5 | 375 | 100 | 784 | 558 | 577 | 164 | 907 | 439 | 952 | 689 | 860 | 3635 | |
| KU- | 17,577 | 5041 | 33,501 | 20,936 | 21,374 | 7235 | 32,035 | 18,925 | 30,559 | 24,589 | 21,646 | 94,187 | |
| 8–7 | 530 | 128 | 1068 | 694 | 650 | 227 | 1057 | 557 | 924 | 716 | 670 | 3728 | |
Upper and lower numbers at each comparison indicate SNPs and indels, respectively. NR non-redundant