REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Mouse Monoclonal Antibody c-Myc (9E10)	Roche	1167203001
Rabbit Polyclonal Antibody GCD6	Covance (CM002)	(Bushman et al., 1993)
Rabbit Polyclonal Anti-Histone H3 Antibody	Abcam	Ab1791
Bacterial and Virus Strains
DH5alpha	NEB	C2987H
Rosetta pLacI-RARE	Novagen	71404
Biological Samples
N/A	N/A	N/A
Chemicals, Peptides, and Recombinant Proteins
Cycloheximide	Sigma	C7698
RNase I	Ambion	AM2294
PNK	NEB	M0201L
Universal miRNA cloning linker	NEB	S1315S
T4 RNA ligase 2, truncated	NEB	M0242L
Superscript III Reverse Transcriptase	Invitrogen	18080044
Lyticase	Sigma	L2524
Creatine kinase	Sigma	000000010127566001
Creatine phosphate	Sigma	10621714001
RiboLock RNase Inhibitor	Thermo Fisher Scientific	EO0381
D-luciferin (Beetle Luciferin, Potassium Salt)	Promega	E1602
DNase I recombinant, RNase-free	Roche	04-716-728-001
SuperScript III First-Strand Synthesis SuperMix for qRT-PCR	Invitrogen	11752-050
Critical Commercial Assays
QuikChange Lightning Site-Directed Mutagenesis Kit	Agilent Technologies	210518
CircLigase ssDNA Ligase Kit	Epicentre	CL4115K
Agilent High Sensitivity DNA Kit	Agilent	5067-4626
RiboMAX Large Scale RNA Production Systems	Promega	P1300
Vaccinia Capping System	NEB	M2080S
Brilliant III Ultra-Fast SYBR Green QPCR Master Mix	Agilent Technologies	600882
Deposited Data
Raw and analyzed data	This paper	GEO: GSE108942
Experimental Models: Cell Lines
N/A	N/A	N/A
Experimental Models: Organisms/Strains
A full list of yeast strains used in this study is provided in Table S1.	This paper	N/A
Oligonucleotides
A full list of oligonucleotides used in this study is provided in Table S2.	This paper	N/A
Recombinant DNA
A full list of plasmids and high copy reporter plasmids used in this study are provided in Tables S3 and S4.	This paper	N/A
Software and Algorithms
Igor Pro Version 7.00	Wavemetrics	15-500
ImageJ Version 2.00-rc-43/1.51p	https://imagej.nih.gov/ij/	N/A
Position average and metagene	This paper	makeposavg makeavggene
Bowtie	Github	(Langmead et al., 2009)
Other