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. 2018 Nov 6;25(6):1622–1635.e6. doi: 10.1016/j.celrep.2018.10.024
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal anti-YAP (63.7) Santa Cruz Biotechnology Cat# sc-101199, RRID: AB_1131430
Mouse monoclonal anti-TEF-1 (H-4) Santa Cruz Biotechnology Cat# sc-376113, RRID: AB_10988229
Rabbit monoclonal anti-CAV1 (D46G3) XP Cell Signaling Tecnology Cat# 3267S, RRID: AB_2275453
Rabbit monoclonal anti-14-3-3 η (D23B7) Cell Signaling Tecnology Cat# 5521S, RRID: AB_10829034
Monoclonal ANTI-FLAG® M2 antibody Sigma-Aldrich Cat# F3165, RRID: AB_259529
Mouse monoclonal anti-glyceraldehyde-3-phosphate dehydrogenase antibody Millipore Cat# MAB374, RRID: AB_2107445
Rabbit polyclonal anti-Phospho-YAP (Ser127) Antibody Cell Signaling Technology Cat# 4911S, RRID: AB_2218913
Rabbit polyclonal anti-Anti-LATS1 Antibody Cell Signaling Technology Cat# 9153S, RRID: AB_2296754
Rabbit polyclonal anti-Anti-LATS1 Antibody Cell Signaling Technology Cat#13646
Rabbit polyclonal anti-Anti-H3 Histone Antibody Abcam Cat# ab1791, RRID: AB_302613
Rabbit polyclonal anti-RHO GDIalpha (A-20) antibody Santa Cruz Biotechnology Cat# sc-360, RRID: AB_2227516
Rabbit monoclonal anti-YAP (D8H1X) XP Cell Signaling Technology Cat# 14074, RRID: AB_2650491
Rabbit Anti-Human Actin, Smooth Muscle Epitope Specific antibody Thermo Fisher Scientific Cat# RB-9010-P0, RRID: AB_149755
Alexa Fluor 488 Goat Anti Mouse IgG (H+L) Molecular Probes Cat# A-11029, RRID: AB_138404
Alexa Fluor 546 Goat Anti Mouse IgM (m chain) Molecular Probes Cat# A-21045, RRID: AB_2535714
Alexa Fluor 546 Goat Anti Rabbit IgG (H+L) Molecular Probes Cat# A-11035, RRID: AB_143051
Alexa Fluor 488 Goat Anti Rabbit IgG (H+L) Molecular Probes Cat# A-11034, RRID: AB_2576217
Goat anti-Mouse IgG (H+L) Secondary Antibody, HRP Thermo Fisher Scientific Cat# 31430, RRID: AB_228307
Goat anti-Rabbit IgG (H+L) Secondary Antibody, HRP Thermo Fisher Scientific Cat# 31460, RRID: AB_228341

Bacterial and Virus Strains

N/A N/A N/A

Biological Samples

N/A N/A N/A

Chemicals, Peptides, and Recombinant Proteins

ROCK inhibitor Y27632 Sigma-Aldrich Y0503; CAS Number 129830-38-2
CytochalasinD Sigma-Aldrich C8273; CAS Number: 22144-77-0
Jasplakinolide Santa Cruz Biotechnology sc-202191; CAS 102396-24-7
Caerulein Sigma-Aldrich C9026; CAS Number: 17650-98-5

Critical Commercial Assays

Lipofectamine RNAiMAX Transfection Reagent Invitrogene Cat#10601435
Alexa Fluor 647 Phalloidin Invitrogene Cat# A22287, RRID:AB_2620155
Dual-Luciferase Reporter Assay System Promega Cat#E1910
RNAeasy micro kit QIAGEN Cat#74004
Omniscript RT kit QIAGEN Cat# 205111
Random primers Promega Cat#C1181
SYBR green Applied Biosystems Cat#4309155
G-Actin/F-actin In Vivo Assay Biochem Kit Cytoskeleton Cat#BK037

Deposited Data

RNaseq data This paper GEO: GSE120514
Mass spectrometry data Table S2 N/A

Experimental Models: Cell Lines

WT and Cav1KO Mouse embryonic fibroblasts (MEF) Razani et al., 2001 N/A
WT and Cav1KO Neonatal Hepatocytes (mouse) Mayoral et al., 2010 N/A
MDA-MB-231 HTB-26 breast adenocarcinoma (human) ATCC Cat# HTB-26, RRID: CVCL_0062
HeLa CCL-2 ATCC Cat# CCL-2, RRID: CVCL_0030
HeLa Cav1–GFP Lukas Pelkmans laboratory N/A
Primary pancreatic cancer associated fibroblasts (PanCAF) Manuel Hidalgo Laboratory N/A

Experimental Models: Organisms/Strains

Mouse: Cav1KO C57BL/6 Drab et al., 2001 N/A

Oligonucleotides

siRNA targeting sequence: Cav1 #1: GAGCUUCCUGAUUGAGAUU (sense sequence) This paper N/A
ON-Target Plus Smart-pool siRNAs; see Table S3 Dharmacon N/A
Primers for qRT-PCR Table S4 N/A

Recombinant DNA

p2xFlag CMV2-YAP2 Oka et al., 2008 Addgene #19045
pCMV-flag YAP2 5SA Zhao et al., 2007 Addgene #27371
8xGTIIC-luciferase Dupont et al., 2011 Addgene #34615
pLVX-CMV-CherryFP-P2A-MetLuc This paper N/A
pLVX_shRNA2 Clontech Cat#632179
CMVCherryFPP2A Viral vectors Unit (CNIC) N/A
pMetLuc reporter Viral vectors Unit (CNIC) N/A
pEGFP–mDia1(DeltaN3) Ishizaki et al., 2001 N/A
pEGFP-RHO(V14) del Pozo et al., 1999 N/A

Software and Algorithms

qBase plus Biogazelle N/A
MATLAB (R2015a) MATLAB N/A
ImageJ National Institutes of Health https://imagej.nih.gov/ij/download.html
FibrilTool plug-in Boudaoud et al., 2014 https://media.nature.com/original/nature-assets/nprot/journal/v9/n2/extref/nprot.2014.024-S3.txt
Ingenuity Pathway Analysis software QIAGEN N/A
Enrichr Enrichr - Ma’ayan Laboratory - Computational Systems Biology http://amp.pharm.mssm.edu/Enrichr/
Columbus Image Data Storage and Analysis System PerkinElmer http://www.perkinelmer.com/es/product/image-data-storage-and-analysis-system-columbus
Search-Based Exploration of Expression Compendium (SEEK) Troyanskaya Functional Genomics Laboratory at Princeton University, 2014 http://seek.princeton.edu/
GraphPad Prism GraphPad Software https://www.graphpad.com/company/
Fisher exact test calculator Social Science Statistics web site http://www.socscistatistics.com/tests/fisher/Default2.aspx

Other

pre-printed micropatterns CYTOO N/A
Fibronectin-coated 6-well plates for uniaxial stretching FlexCell Cat# UF-4001P
Flexcell FX-5000 Tension System FlexCell N/A
Protein G Sepharose 4 Fast Flow GE Healthcare Cat# GE17-0618-01