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. 2018 Nov 12;9:4764. doi: 10.1038/s41467-018-07145-6

Fig. 1.

Fig. 1

Staphylococcal B domains are extremely resilient to mechanical force. a B domains, here from SdrG, are the link between the extremely strong interaction between the tip adhesin domain N2N3 (blues) binding a peptide (orange) presented by a host protein covering a surface (in this case fibrinogen, purple). b SdrG gene (top) and schematic (bottom): N-terminal N1 domain may be cleaved proteolytically, followed by the N2 and N3 domain that bind Fgß, B1 (green), and B2 (brown) each coordinate three Ca2+ ions and connect to the SD repeat region that gives the adhesin its name. The adhesin is covalently anchored to the bacterium’s peptidoglycan via a sortase motif (red). c MD equilibrated structure of the SdrG N2N3 domains connected to the fully ß-sheet Ig-like folds of the B1 and B2 domain (modeled from the homolog SdrD B1), each B domain coordinates three Ca2+ ions (yellow). d AFM-SMFS assay: covalent surface anchoring through polyethylene glycol (PEG) via the ybbr-tag (purple) using Fgß (orange)-ddFLN4 (cyan)-ybbr to probe SdrG N2N3-B1-ybbr on the cantilever. e Single force-extension trace at 0.8 µm s−1 with unfolding of the ddFLN4 fingerprint (cyan arrow) at ~ 100 pN, followed by the SdrG B1 domain (green circle) at >2 nN (with the expected contour length increment of ~ 36 nm). Finally the SdrG N2N3:Fgß complex dissociates, allowing the cantilever to relax to zero force. f Dynamic force spectrum for the unfolding of the SdrG B1 domain at retraction velocities: 0.4 µm s−1 (triangles, N = 574), 0.8 µm s−1 (squares, N = 742), 1.6 µm s−1 (diamonds, N = 878), 3.2 µm s−1 (forward triangles, N = 789), 6.4 µm s−1 (circles, N = 729). The high N value suggests that the B1 domain refolds on the cantilever. A Bell–Evans model fit (dashed line, ∆x = 0.082 nm, koff0 = 3.8E–17 s−1) through the most probable rupture force and force loading rate per velocity (large open markers, errors given as full-width at half maximum for each distribution) confirms the expected log-linear behavior