Table 2.

Origin of the Salmonella isolates selected for WGS and results of the characterization of their ESBL/pAmpC genes, plasmids, and strains.

Source	Year	Strain	Location (Department)	Accession number ENA	β-lactam resistance genesa	ESBL/pAmpC-harboring plasmidc	S. enterica Serovar	S. enterica MLST
Farm	2008	SSXXXV.4.C1	Santander	ERS2017899	blaCMY−2	IncI1/ST12	S. Java	ST28
		SSIII.4.C2	Santander	ERS2017900	blaCMY−2-${\mathrm{bla}}_{\text{SHV}-129}^b$-blaTEM−1A	IncI1/ST12	S. Java	ST28
		SXXI.1.C5	Cundinamarca	ERS2017901	blaCMY−2	IncI1/ST12	S. Java	ST28
Slaughter	2012	FBOG8	Bogotá	ERS2017931	blaCMY−2	IncI1/ST12	S. Java	ST28
		FSAN161	Santander	ERS2017935	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
		FSAN236	Santander	ERS2017936	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
		FBOG7	Bogotá	ERS2017938	blaCMY−2	IncI1d	S. Java	ST28
	2013	FSUC414	Sucre	ERS2017932	blaCMY−2-blaCTX−M−165-blaTEM−1B	IncI1/ST12-IncQ1e	S. Heidelberg	ST15
		FCAR509	Bolívar	ERS2017933	blaCMY−2	IncI1/ST12	S. Heidelberg	ST15
		FANT596	Antioquia	ERS2017934	blaCMY−2-blaSHV−129-blaTEM−1B	IncI1/ST12	S. Java	ST28
		FVAL369	Valle del Cauca	ERS2017937	blaCMY−2	IncI1/ST12	S. Heidelberg	ST15
		FPAS506	Nariño	ERS2017939	blaCMY−2-blaCTX−M−165	IncI1/ST12-Non - typeablee	S. Heidelberg	ST15
Retail	2010	UGBOG4	Bogotá	ERS2017904	blaCMY−2-blaSHV−12	IncI1/ST12-Non - typeablee	S. Java	ST28
		UGBOG316	Bogotá	ERS2017908	blaSHV−12	Non-typeable	S. Heidelberg	ST15
		UGBOG327	Bogotá	ERS2017909	blaSHV−12	IncI1/ST231	S. Java	ST28
		UGBOG339	Bogotá	ERS2017910	blaSHV−12	IncI1/ST231	S. Java	ST28
		UGBOG340	Bogotá	ERS2017911	blaSHV−12	IncI1/ST231	S. Java	ST28
	2011	UGBAR394	Atlántico	ERS2017912	blaCMY−2-blaCTX−M−165-blaTEM−1B	IncI1/ST12-IncQ1e	S. Heidelberg	ST15
		UGBAR434	Atlántico	ERS2017913	blaCMY−2	IncI1/ST12	S. Albany	ST292
		UGCAR507	Bolívar	ERS2017914	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
		UGVAL515	Valle del Cauca	ERS2017915	blaCMY−2-blaSHV−129	IncI1d	S. Heidelberg	ST15
		UGBUC832	Santander	ERS2017916	blaSHV−129	-	S. Heidelberg	ST15
		UGCUC851	Norte de Santander	ERS2017917	blaCMY−2	IncI1/ST12	S. Java	ST28
		UGCUC867	Norte de Santander	ERS2017918	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
		UGARA888	Arauca	ERS2017919	blaCMY−2	IncI1/ST12	S. Enteritidis	ST11
		UGIBA933	Tolima	ERS2017920	blaSHV−12	IncI1/ST231	S. Java	ST28
		UGPER971	Risaralda	ERS2017921	blaCMY−2	IncI1/ST12	S. Java	ST28
		UGBOG1024	Bogotá	ERS2017922	blaCMY−2	IncI1/ST12	S. Java	ST28
		UGPAS1097	Nariño	ERS2017923	blaCMY−2	IncI1/ST12	S. Kentucky	ST152
		UGBUC1112	Santander	ERS2017924	blaCTX−M−165	Non-typeable	S. Heidelberg	ST15
		UGBUC1123	Santander	ERS2017925	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
		UGBAR1160	Atlántico	ERS2017926	blaCTX−M−165	IncQ1	S. Heidelberg	ST15
		UGBAR1170	Atlántico	ERS2017927	blaCMY−2-blaSHV−129-blaTEM−1B	IncI1/ST12	S. Java	ST28
		UGBAR1187	Atlántico	ERS2017928	blaCTX−M−165-blaTEM−1B	IncQ1	S. Heidelberg	ST15
	2012	UGBOG1279	Bogotá	ERS2017929	blaSHV−12	Non-typeable	S. Heidelberg	ST15
		UGBOG1280	Bogotá	ERS2017930	blaCMY−2	Non-typeable	S. Java	ST28

^aThe genes present in the contigs selected for plasmid characterization have been underlined.

^bblaSHV-129 was non-transferable after electroporation experiments.

^cThe plasmids carrying the β-lactam resistance genes have been underlined.

^dThese plasmids missed one allele from the pMLST scheme.

^eCharacterization of the two ESBL/pAmpC genes was performed in separate plasmid contigs.