Table 1.

Genes near to the most suggestive SNPs (P < 0.0001) for six reproductive traits

Traits	SNP ID	Chr	Position(bp)	Within Gene	Nearst Gene
FCA	AX-85104022	15	15,493,494	–	SESN3
	AX-85147160	15	15,464,584	–	SESN3
	AX-85066093	3	14,263,986	–	GPATCH4
SCA	AX-85115405	3	14,360,109	–	IQGAP3
	AX-85098201	7	40,737,269	–	COL23A1
	AX-85077363	1	31,982,649	–	CADM2
	AX-85041155	1	31,452,080	–	CADM2
	AX-85178307	7	46,586,723	–	FSTL4
TCA	AX-85178307	7	46,586,723	–	FSTL4
	AX-85097354	16	59,785,310	–	BRINP2
	AX-85109602	28	32,271,813	–	KCNMA1
	AX-85092311	18	46,969,939	TBCB	–
	AX-85115405	3	14,360,109	–	MEF2D
	AX-85160204	6	74,395,035	–	IGFBP7
	AX-85115163	19	21,212,867	–	NUFIP2
	AX-85128429	3	8,311,409	NDUFS2	–
	AX-85127260	28	32,296,913	–	KCNMA1
	AX-85060416	12	3,071,256	–	DIAPH3
NSC	AX-85122558	2	54,971,771	–	KYNU
	AX-85080363	20	48,102,049	–	CDH10
	AX-85149823	27	41,131,140	–	THRB
	AX-85080722	2	55,117,009	–	KYNU
	AX-85118378	27	37,743,905	–	CSGALNACT1
	AX-85069249	28	32,035,318	–	ZNF503
	AX-85069116	20	47,969,440	–	CDH10
OD	AX-85166811	5	2,459,053	–	TRHDE
	AX-85107057	5	2,430,266	–	TRHDE
	AX-85107924	5	2,493,145	–	TRHDE
	AX-85078259	5	2,531,719	–	TRHDE
	AX-85136537	5	2,378,071	TRHDE	–
	AX-85092056	5	2,670,570	–	TRHDE
	AX-85058327	4	89,251,931	–	HYAL4
	AX-85129886	5	5,220,162	–	KRR1
	AX-85080072	4	100,837,591	–	MTPN
CI	AX-85097797	10	69,031,255	–	PELI2
	AX-85056150	12	70,335,740	–	SOX21
	AX-85091977	23	51,462,571	–	GMDS
	AX-85082041	6	5,090,318	–	PRDM5
	AX-85127260	28	32,296,913	–	KCNMA1
	AX-85154020	3	56,690,373	–	LMO4

FCA Age at first calving, SCA Age at second calving, TCA Age at third calving, CI Calving interval, NSC The number of artificial insemination, OD The open days. Chr and Position were obtained based on the cattle genome (Bos taurus UMD3.1 assembly)