Table 2.
Primers used and nucleotide diversity observed within the Leu. citreum strains
| Locus | Primer sequence (5′–3′) | Length (bp) | Sequence used (bp) | Polymorphic sites | No. of alleles | G + C content | π Value | Tajima’s D value | dN/dS ratio |
|---|---|---|---|---|---|---|---|---|---|
| atpA | F-GTTTTCGAGCCATTACAA R-GTGATTGAGATAACGTTTG |
590 | 567 | 7 | 5 | 40.74 | 0.00529 | − 0.746820 | 0 |
| dnaA | F-CCAATTACAAAAGAGGAACTA R-TTATCTTGTTGGTTGCGTG |
1261 | 1100 | 3 | 4 | 37.79 | 0.00151 | 0.167656 | 0 |
| dnaK | F-GAAGGTGGCGAACCAAAAA R-AGCCAATGCTTCTGTCTTAG |
1647 | 806 | 22 | 10 | 41.28 | 0.00896 | − 0.337078 | 1.1951 |
| gyrB | F-ATAAAGTCTCTGGTGGATT R-TGGTAGGATAGCTTGTGTTA |
1022 | 800 | 1 | 2 | 41.62 | 0.00067 | 1.475424 | 0 |
| pheS | F-CACAAACTTCACCTGT R-ACGTCTACTTCAACTG |
286 | 264 | 5 | 8 | 41.71 | 0.00757 | 0.168432 | 0.3874 |
| pyrG | F-ACCGTGGCTTAAAATTGGC R-TCACTGCCAAGATCTGATTTCAT |
415 | 398 | 11 | 9 | 39.06 | 0.01060 | 0.203116 | 0.1152 |
| rpoA | F-CGTTGTTGAAGATGTCACAC R-GCCAACACGCCGATAG |
291 | 271 | 2 | 3 | 42.9 | 0.00113 | − 1.468006 | 0.2459 |
π, nucleotide diversity per site; dN, number of nonsynonymous changes per nonsynonymous site; dS, number of synonymous changes per synonymous site