A. gRNA cloning and sequencing
|
bnl-lexA gRNA fwd |
TATATAGGAAAGATATCCGGGTGAACTTCgTGTATCTGCGAT GCCCCTCAGTTTTAGAGCTAGAAATAGCAAG
|
bnl-lexA gRNA rev |
ATTTTAACTTGCTATTTCTAGCTCTAAAACTCCCGCAATATCTGAAGG ATcGACGTTAAATTGAAAATAGGTC
|
T3 primer used for sequencing |
CAATTA ACCCTCACTAAAGG-3'
|
Note: nucleotides underlined anneal to U6 promoter or gRNA core on pCFD4 vector, the lowercase g/c was added to aid U6 promoter-dependent transcription |
B. HDR donor construction
|
bnl N-F_pUC19 |
AATTCGAGCTCGGTACtgtggtctttgaggctggaac |
bnl-lexA-N-R |
tCCGcaagtCagtAGgctgccgcgtccttcgccggaGCCCGCAGATACAAGGCCC C |
lexA-F |
CTactGacttgCGGaGAtGTcGAaGAGAACCCtGGCCCtATGCCACCCAA GAAGAAGC |
lexA-R |
CTAAACGAGTTTTTAAGCAAACTCACTC |
bnl lexA-C Fwd |
TAAAAACTCGTTTAGACGGGATGGCGTTGTCAAC |
bnl C-R_pUC19 |
GCCAAGCTTGCATGCCtcgcataattgccgcctgg |
Note: nucleotides in capital overlap with pUC19 vector for Gibson Assembly, nucleotides underlined were sequence overhang for T2A peptide addition. |
C. HDR screening and sequencing
|
bnl-lexA scr fwd1 |
GTGGCGCACGCCCAATAAAC |
bnl-lexA scr rev1 |
GATCCCAGCCAATCTCCGTTG |
bnl-lexA scr fwd2 |
CAACGGAGATTGGCTGGGATC |
bnl-lexA scr rev2 |
CTGGCCAACTGTAGGGAAGTC |
ends-in check rev3 |
GCAATGTTATGCAATGCGTTGAC |
bnl-lexA seq fwd3 |
CACTTGTCGCCCATATTGATACAATTG |
NOTE: These primers were used for PCR screening and sequencing, the approximate locations of primer binding sites are shown in Figure 5A as fwd1-2 and rev1-3. |
D. RT-PCR analysis
|
RT-f |
GATATGGATTTCTCCGCTTTGCTG |
RT-r |
CCATGCAGAGATACAGGCAAGTG |