Table 4.
Genotype frequencies of SNPs of Mx1 SNPs in eight chicken populations
| CK | GYG | JYB | GSH | TC | DHB | LLH | CB | |
|---|---|---|---|---|---|---|---|---|
| SNP1 | ||||||||
| AA | 80% | 93.33% | 100% | 100% | 96.67% | 93.33% | 100% | 100% |
| AG | 20% | 6.67% | 0% | 0% | 3.33% | 6.67% | 0% | 0% |
| GG | 0% | 0% | 0% | 0% | 0% | 0% | 0% | 0% |
| SNP2 | ||||||||
| CC | 46.67% | 86.67% | 76.67% | 80% | 90% | 33.33% | 100% | 63.33% |
| CT | 43.33% | 13.33% | 23.33% | 20% | 10% | 46.67% | 0% | 36.67% |
| TT | 10% | 0% | 0% | 10% | 0% | 20% | 0% | 0% |
| SNP3 | ||||||||
| AA | B 56.67% | A 26.67% | B 66.67% | A 36.67% | A 40% | B 56.67% | C 3.33% | B 60% |
| AG | 40% | 60% | 26.67% | 50% | 40% | 33.33% | 70% | 40% |
| GG | 3.33% | 13.33% | 6.67% | 13.33% | 20% | 10% | 26.67% | 0% |
| SNP4 | ||||||||
| CC | A 23.33% | AB 26.67% | A 13.33% | A 13.33% | A 23.33% | A 20% | B 36.67% | B 46.67% |
| CG | 40% | 56.67% | 46.67% | 53.33% | 43.33% | 46.67% | 60% | 46.67% |
| GG | 36.67% | 16.67% | 40% | 33.33% | 33.33% | 33.33% | 3.33% | 6.67% |
| SNP5 | ||||||||
| CC | A 36.67% | AB 16.67% | A 40% | A 33.33% | A 33.33% | A 33.33% | B 3.33% | B 6.67% |
| CT | 40% | 56.67% | 46.67% | 53.33% | 43.33% | 46.67% | 60% | 46.67% |
| TT | 23.33% | 26.67% | 13.33% | 13.33% | 23.33% | 20% | 36.67% | 46.67% |
| SNP6 | ||||||||
| AA | A 60% | DE 16.67% | AB 56.67% | CD 33.33% | BC 36.67% | ABC 46.67% | E 3.33% | DE 16.67% |
| AT | 33.33% | 66.67% | 33.33% | 50% | 43.33% | 43.33% | 66.67% | 60% |
| TT | 6.67% | 16.67% | 10% | 16.67% | 20% | 10% | 30% | 23.33% |
| SNP7 | ||||||||
| AA | A 23.33% | B 6.67% | B 3.33% | D 0% | D 3.33% | A 40% | D 3.33% | C 36.67% |
| AG | 53.33% | 46.67% | 50% | 13.33% | 23.33% | 40% | 6.67% | 60% |
| GG | 23.33% | 46.67% | 46.67% | 86.67% | 73.33% | 20% | 90% | 3.33% |
| SNP8 | ||||||||
| AA | B 23.33% | BC 36.67% | C 46.67% | D 86.67% | D 73.33% | AB 20% | D 90% | E 3.33% |
| AG | 53.33% | 50% | 50% | 13.33% | 23.33% | 40% | 8.33% | 60% |
| GG | 23.33% | 13.33% | 3.33% | 0% | 3.33% | 40% | 1.67% | 36.67% |
| SNP9 | ||||||||
| AA | A 23.33% | B 46.67% | BC 46.67% | A 23.33% | B 56.67% | A 23.33% | D 6.67% | C 60% |
| AG | 56.67% | 36.67% | 46.67% | 51.67% | 30% | 46.67% | 70% | 40% |
| GG | 20% | 16.67% | 6.67% | 25% | 13.33% | 30% | 23.33% | 0% |
| SNP10 | ||||||||
| TT | 100% | 80% | 83.33% | 80% | 76.67% | 80% | 70% | 100% |
| TC | 0% | 20% | 13.33% | 20% | 20% | 20% | 30% | 0% |
| CC | 0% | 0% | 3.33% | 0% | 3.33% | 0% | 0% | 0% |
| SNP11 | ||||||||
| CC | AB 43.33% | A 40% | A 26.67% | A 26.67% | C 10% | B 53.33% | D 3.33% | A 30% |
| CT | 50% | 56.67% | 66.67% | 56.67% | 33.33% | 33.33% | 93.33% | 66.67% |
| TT | 6.67% | 3.33% | 6.67% | 16.67% | 56.67% | 13.33% | 3.33% | 3.33% |
| SNP12 | ||||||||
| AA | ABC 10% | A 3.33% | AB 6.67% | B 16.67% | D 43.33% | C 13.33% | AB 3.33% | E 3.33% |
| AG | 53.33% | 56.67% | 63.33% | 56.67% | 46.67% | 33.33% | 66.67% | 96.67% |
| GG | 36.67% | 40% | 30% | 26.67% | 10% | 53.33% | 30% | 0% |
| SNP13 | ||||||||
| AA | 0% | 0% | 0% | 0% | 0% | 0% | 0% | 0% |
| AG | 10% | 10% | 10% | 1.67% | 3.33% | 3.33% | 33% | 0% |
| GG | 90% | 90% | 90% | 98.33% | 96.67% | 96.67% | 67% | 100 |
Label in the top left corner containing the same letter represents the difference was not significant peer data (P > 0.05), without the same letter represents significant difference (P < 0.05) in one line. The frequency distribution of SNP1, 2, 10, and 13 did not satisfy the conditions of Chi-square test