Table 9.
Sites found to be under positive selection using the FEL, IFEL, SLAC, FUBAR, and MEME methods implemented in Datamonkey server (http://www.datamonkey.org)
| Codon | FEL | IFEL | SLAC | FUBAR | MEME | ||||
|---|---|---|---|---|---|---|---|---|---|
| dN-dS | p value | dN-dS | p value | dN-dS | p value | dN-dS | Posterior probability | p value | |
| 3 | 445.025 | 0.105 | 462.228 | 0.125 | 27.567 | 0.277 | 8.409 | 0.965 | 0.131 |
| 5 | 1315.42 | 0.00738 | 1604.91 | 0.0061 | 83.664 | 0.0314 | 21.569 | 0.998 | 0.0124 |
| 21 | 1335.5 | 0.00191 | 1579.08 | 0.00246 | 81.175 | 0.0167 | 21.365 | 0.999 | 0.00356 |
| 41 | 394.713 | 0.106 | 270.06 | 0.219 | 25.803 | 0.257 | 10.399 | 0.984 | 0.132 |
| 42 | 509.563 | 0.0399 | 346.725 | 0.133 | 33.356 | 0.107 | 13.485 | 0.993 | 0.0568 |
| 308 | 665.947 | 0.061 | 795.337 | 0.0535 | 45.878 | 0.150 | 14.959 | 0.992 | 0.0821 |
| 339 | 896.401 | 0.0130 | 1045.32 | 0.013 | 67.468 | 0.026 | 19.902 | 0.999 | 0.0208 |
FEL, IFEL, SLAC, and MEME test significance levels are given as p values, while posterior probability are given for FUBAR
Sites found under positive selection were labeled in bold (p < 0.05, posterior probability > 0.95)