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. 2018 Sep 20;178(3):1065–1080. doi: 10.1104/pp.18.00912

Table 2. Thylakoid lumen and integral membrane proteins significantly down-regulated in deg1 and deg158 mutants compared with the wild type.

Values in boldface indicate greater than 30% decrease in the steady-state level in the mutants.

Gene Identifiera Nameb Functionb deg1/Wild Type (P Value)c deg158/Wild Type (P Value)c Locationd
AT3G27925 Deg1 Protease <10−6(0.00) <10−6(0.00) L
AT4G18370 Deg5 Protease 0.79 (0.02) <10−6(0.00) L
AT5G39830 Deg8 Protease 0.63 (0.00) 0.01 (0.00) L
ATCG00020 PsbA PSII reaction center ns 0.75 (0.03) M
ATCG00680 PsbB PSII reaction center 0.79 (0.01) 0.73 (0.02) M
ATCG00280 PsbC PSII reaction center 0.82 (0.01) 0.75 (0.01) M
ATCG00270 PsbD PSII reaction center 0.82 (0.01) 0.79 (0.01) M
ATCG00580 PsbE PSII reaction center 0.72 (0.01) 0.65 (0.00) M
ATCG00710 PsbH PSII reaction center ns 0.67 (0.03) M
ATCG00560 PsbL PSII reaction center 0.78 (0.05) 0.57 (0.01) M
AT1G79040 PsbR PSII reaction center 0.78 (0.01) 0.74 (0.04) M
AT4G05180 PsbQ2 Oxygen evolution 0.84 (0.04) 0.77 (0.04) L
AT3G21055 PsbTN Oxygen evolution ns 0.56 (0.03) L
AT5G11450 PPD5 Oxygen evolution 0.80 (0.01) 0.69 (0.00) L
AT3G61470 LHCA2 PSII antenna 0.77 (0.01) ns M
AT5G54270 LHCB3 PSII antenna 0.65 (0.00) 0.56 (0.01) M
AT5G01530 LHCB4.1 PSII antenna 0.91 (0.04) ns M
AT2G40100 LHCB4.3 PSII antenna 0.60 (0.01) 0.46 (0.00) M
AT4G10340 LHCB5 PSII antenna 0.90 (0.03) 0.84 (0.02) M
ATCG00350 PsaA PSI reaction center 0.67 (0.00) 0.57 (0.01) M
ATCG00340 PsaB PSI reaction center 0.83 (0.02) 0.67 (0.00) M
AT4G02770 PsaD1 PSI reaction center ns 0.60 (0.03) PS
AT1G31330 PsaF PSI reaction center 0.73 (0.00) 0.68 (0.00) M
AT1G55670 PsaG PSI reaction center 0.66 (0.03) 0.40 (0.01) M
AT1G08380e PsaO PSI reaction center 0.02 (0.02) ns M
AT3G54890 LHCA1.1 PSI antenna 0.75 (0.00) 0.75 (0.01) M
AT1G19150e LHCA1.2 PSI antenna 0.57 (0.00 0.75 (0.02) M
AT1G45474e LHCA5 PSI antenna 0.44 (0.02) ns M
ATCG00540 PETA Cyt b6f complex 0.76 (0.00) 0.81 (0.01) M
ATCG00720 PETB Cyt b6f complex 0.74 (0.01) 0.72 (0.01) M
AT4G03280 PETC Cyt b6f complex 0.76 (0.01) 0.70 (0.02) M
ATCG01100e NDHA NADH dehydrogenase 0.60 (0.01) 0.48 (0.01) M
ATCG01010 NDHF NADH dehydrogenase 0.85 (0.02) 0.78 (0.03) M
ATCG00430 NDHK NADH dehydrogenase 0.82 (0.03) ns PS
AT5G58260 NDHN NADH dehydrogenase 0.82 (0.02) 0.65 (0.01) PS
AT4G23890 NDHS NADH dehydrogenase 0.68 (0.00) 0.65 (0.00) PS
AT5G21430 NDHU NADH dehydrogenase 0.79 (0.04) 0.71 (0.04) M
AT2G04039 NDHV NADH dehydrogenase 0.61 (0.02) 0.51 (0.043) PS
AT1G15980 PnsB1 NADH dehydrogenase 0.72 (0.01) 0.73 (0.01) L
AT5G43750 PnsB5 NADH dehydrogenase 0.73 (0.00) 0.73 (0.01) L
ATCG00120 ATPA ATP synthase complex ns 0.90 (0.03) PS
AT4G09650 ATPD ATP synthase complex 0.76 (0.01) ns PS
AT4G32260 ATPG ATP synthase complex 0.82 (0.03) ns M
ATCG00150e ATPI ATP synthase complex 0.57 (0.01) ns M
AT5G08050 RIQ1 Thylakoid architecture 0.40 (0.00) 0.33 (0.00) M
AT1G74730e RIQ2 Thylakoid architecture 0.63 (0.00) 0.58 (0.01) M
AT1G18170 FKBP17-2 Protein folding ns 0.81 (0.04) L
AT5G13410 FKBP19 Protein folding ns 0.66 (0.04) L
AT5G42765 AT5G42765 Unknown 0.59 (0.00) 0.56 (0.00) M
a

According to TAIR (https://www.arabidopsis.org).

c

Student’s t test. ns, Nonsignificant change with P > 0.05.

d

Suborganellar location. L, Soluble in the lumen and/or peripheral to the membrane; M, thylakoid integral membrane protein; PS, peripheral on the stromal side of the thylakoid membrane.

e

Identified by a single peptide.