| REAGENT or RESOURCE |
SOURCE |
IDENTIFIER |
|
| Antibodies |
|
| Total Rodent OXPHOS WB Antibody
Cocktail |
Abcam |
Cat# ab110413; RRID: AB_2629281 |
|
| Chemicals, Peptides, and
Recombinant Proteins |
|
| Tris salt of
phosphocreatine |
Millipore Sigma |
Cat# P1937 |
| CAS# 108321–17-1 |
| Tris salt of ATP |
Millipore Sigma |
Cat# A9062 |
| CAS# 102047–34-7 |
| Potassium pyruvate |
Combi-Blocks |
Cat# QA-1116 |
| CAS# 4151–33-1 |
| Potassium NADP+ |
Ark-Pharm, Inc |
Cat# AK671068 |
| Creatine kinase from rabbit
muscle |
Millipore Sigma |
Cat# 10736988001 |
| Percoll solution |
Millipore Sigma |
Cat# P1937 |
| CAS#108321–17-1 |
| Amplex Ultra Red Reagent (AUR) |
ThermoFisher Scientific |
Cat# A36006 |
| CelLytic M |
Millipore Sigma |
Cat# C2978 |
| Tetramethylrhodamine methyl ester
(TMRM) |
ThermoFisher Scientific |
Cat# T668 |
| Phosphoenoyl-pyruvate |
Millipore Sigma |
Cat# 10108294001; |
| CAS# 4265–07-0 |
| UK5099 |
Millipore Sigma |
Cat# PZ0160; |
| CAS# 56396–35-1 |
| Auranofin |
Millipore Sigma |
Cat# A6733; |
| P1,P5-Di(adenosine-5ʹ)pentaphosphate |
Millipore Sigma |
Cat# D6392; |
| CAS# 75522–97-3 |
| Oligomycin |
Millipore Sigma |
Cat# 75351 |
| CAS# 579–13-5 |
| Rotenone |
Millipore Sigma |
Cat# R8875 |
| CAS# 83–79-4 |
| Potassium cyanide |
Millipore Sigma |
Cat# 60178 |
| CAS# 151–50-8 |
| Carbonyl cyanide
4-(trifluoromethoxy)phenylhydrazone (FCCP) |
Millipore Sigma |
Cat# C2920 |
| CAS# 370–86-5 |
| Peroxidase from
horseradish (HRP) |
Millipore Sigma |
Cat# P8375 |
| CAS# 9003–99-0 |
| Superoxide dismutase
(SOD) |
Millipore Sigma |
Cat# S9697 |
| CAS# 9054–89-1 |
| Glucose-6-phosphate
Dehydrogenase (G6PDH) |
Millipore Sigma |
Cat# G6378 |
| CAS# 9001–40-5 |
| Malate dehydrogenase
(MDH) |
Millipore Sigma |
Cat# 442610-M |
| CAS# 9001–64-3 |
| Pyruvate Kinase/Lactic Dehydrogenase
enzymes from rabbit muscle |
Millipore Sigma |
Cat# P0294 |
| Hexokinase |
Millipore Sigma |
Cat# H4502 |
| CAS# 9002–07-7 |
| Trypsin from porcine
pancreas (Trypsin) |
Millipore Sigma |
Cat# T4799 |
| CAS# 9001–51-8 |
| Creatine Monohydrate |
Millipore Sigma |
Cat# C3630 |
| CAS# 6020–87-7 |
| Octanoyl-L-carnitine |
Millipore Sigma |
Cat# 50892 |
| CAS# 25243–95-2 |
| Malic acid (Malate) |
Millipore Sigma |
Cat# M1000 |
| CAS# 97–67-6 |
| Glutamic acid
(Glutamate) |
Millipore Sigma |
Cat# G1501 |
| CAS# 6382–01-0 |
| Succinic acid
(Succinate) |
Millipore Sigma |
Cat# S3674 |
| CAS# 110–15-6 |
| α-ketoglutaric acid
(AKG) |
Millipore Sigma |
Cat# K1750 |
| CAS# 328–50-7 |
| 3-Methyl-2-oxopentanoic
acid (α -keto-β-methylvalerate) |
Millipore Sigma |
Cat#198978; |
| CAS#3715–31-9 |
| Isocitrate |
Millipore Sigma |
Cat#58790; |
| CAS#20226–99-7 |
| Adenosine diphosphate
(ADP) |
Millipore Sigma |
Cat# A5285 |
| CAS# 72696–48-1 |
| Tetraphenylphosphonium
(TPP+) |
Millipore Sigma |
Cat# 218790 |
| CAS# 2001–45-8 |
| NADH |
Millipore Sigma |
Cat# N4505 |
| CAS# 104809–32-7 |
| Nicotinamide adenine
dinucleotide (NAD+) |
Millipore Sigma |
Cat# N1636 |
| CAS# 53–84-9 |
| L-Aspartic acid
(Aspartate) |
Millipore Sigma |
Cat# A9256 |
| CAS# 56–84-8 |
| Acetoacetyl-CoA |
Millipore Sigma |
Cat# A1625 |
| CAS# 1420–36-6 |
| Coenzyme A |
Millipore Sigma |
Cat# C3019 |
| CAS# 18439–24-2 |
| Thiamine
pyrophosphate |
Millipore Sigma |
Cat# C8754 |
| CAS# 154–87-0 |
| Pyridoxal
5′-phosphate |
Millipore Sigma |
Cat# P9255 |
| CAS# 853645–22-4 |
|
| Experimental Models:
Organisms/Strains |
|
| C56BL/6NJ mice |
The Jackson Laboratory |
Stock #005304 |
|
| Software and
Algorithms |
|
| Jupyter notebook containing the
aΔΨ ustment calculations interspersed with
procedural descriptions needed to calculate
ΔGATP. |
N/A |
https://github.com/dmpio/bioenergeticcalculators/blob/master/jupyter_notebook/creatine-kinase-clamp.ipynb
|
| Web-based ΔGATP
calculator |
N/A |
https://dmpio.github.io/bioenergeticcalculators/ck_clamp/
|
|
| Other |
|
| Ultracentrifuge tubes for
mitochondrial percoll purifications |
Beckman Coulter |
Cat# 344061 |
| Swinging bucket ultracentrifuge rotor
for mitochondrial percoll purifications – Surespin 630
with tube adapters |
ThermoFisher Scientific |
Cat# 79363 |
| QuantaMaster Spectrofluorometer |
Horiba Scientific |
Cat# QM-400 |