Table 2.
Single turnover kinetic data for WT and I260Q pol β on single-nucleotide gapped DNA
| Sequencea | Protein | k pol (s−1) | K d(dNTP) (μM) | Dk pol b | DKd (dNTP) c | Efficiencyd (μM−1s−1) | Fidelitye | X-foldf |
|---|---|---|---|---|---|---|---|---|
| G:dC | WT | 12.0±0.9 | 1.5±0.6 | 8 | ||||
| I260Q | 3.6±0.08 | 0.6±0.1 | 6 | |||||
| G:dA | WT | 0.134±0.008 | 365±59 | 90 | 243 | 3.7 × 10−4 | 21623 | |
| I260Q | 0.095±0.004 | 16±3 | 38 | 27 | 5.9 × 10−3 | 1011 | 21.4 | |
| T:dA | WT | 12.2±0.6 | 5.8±0.9 | 2.1 | ||||
| I260Q | 5.5±0.21 | 1.9±0.3 | 2.9 | |||||
| T:dC | WT | 0.14±0.01 | 427±66 | 87 | 72 | 3.3 × 10−4 | 6364 | |
| I260Q | 0.09±0.003 | 11.5±2.5 | 61 | 6 | 7.8 × 10−3 | 372 | 17.1 |
aThe primer-template is extG or extT, with templating base G or T; templating base:incoming dNTP is shown.
bDiscrimination of kpol= kpol(correct)/ kpol(incorrect).
cDiscrimination of Kd(dNTP) = Kd(dNTP)(incorrect)/ Kd(dNTP)(correct).
dEfficiency = kpol/Kd(dNTP).
eFidelity = (correct efficiency + incorrect efficiency)/incorrect efficiency.
f X-fold = WT fidelity/I260Q fidelity.