Table 1.
PFAM and InterPro annotation for A. oryzae M2040 lineage specific genes. The A. oryzae M2040 lineage specific genes and predicted domains.
| Scaffold | Gene ID | PFAM Domain | InterPro Classification |
|---|---|---|---|
| NODE_14 | g1437 | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase |
| NODE_17 | g1677 | Domain of unknown function (DUF3328) | Mycotoxin biosynthesis protein UstYa-like |
| NODE_17 | g1678 | Domain of unknown function (DUF3328) (x2) | Mycotoxin biosynthesis protein UstYa-like (x2) |
| NODE_35 | g3027 | Ankyrin repeat (x2) | Ankyrin repeat (x2) |
| Ankyrin repeats (many copies) | AAA + ATPase domain | ||
| AAA domain | Ankyrin repeat-containing domain | ||
| Ankyrin repeats (3 copies) | |||
| NODE_54 | g4145 | Phosphotransferase enzyme family | Aminoglycoside phosphotransferase |
| NODE_54 | g4153 | Patatin-like phospholipase | Patatin-like phospholipase domain |
| NODE_54 | g4155 | FAD-binding domain | FAD-binding 8 |
| Ferric reductase NAD binding domain | Ferric reductase, NAD binding domain | ||
| NODE_54 | g4156 | Protein kinase domain | Protein kinase domain |
| NODE_54 | g4157 | Protein of unknown function (DUF3723) | Protein of unknown function DUF3723 |
| NODE_54 | g4161 | Protein of unknown function (DUF3435) | Protein of unknown function DUF3435 |
| NODE_73 | g5191 | WD domain, G-beta repeat (x8) | WD40 repeat (x8) |
| NODE_193 | g9143 | SET domain | SET domain |
| NODE_194 | g9174 | AAA domain (x2) | |
| NODE_194 | g9176 | Argonaute linker 1 domain | Piwi domain |
| Piwi domain | Argonaute, linker 1 domain | ||
| PAZ domain | PAZ domain | ||
| Helicase conserved C-terminal domain | Helicase, C-terminal | ||
| N-terminal domain of argonaute | Protein argonaute, N-terminal | ||
| Dicer dimerisation domain | Dicer dimerisation domain | ||
| Ribonuclease III domain (x2) | Ribonuclease III domain (x2) | ||
| NODE_289 | g10541 | Protein kinase domain | Protein kinase domain |
| Ulp1 protease family, C-terminal catalytic domain | Ulp1 protease family, C-terminal catalytic domain | ||
| NODE_290 | g10546 | Man1-Src1p-C-terminal domain | Man1-Src1p-C-terminal domain |
| NODE_326 | g10914 | Ferric reductase like transmembrane component | Ferric reductase transmembrane component-like domain |
| FAD-binding domain | FAD-binding 8 | ||
| NODE_326 | g10915 | Phosphorylase superfamily | Nucleoside phosphorylase domain |
| NODE_326 | g10916 | Protein kinase domain | Protein kinase domain |
| NODE_341 | g11019 | Protein of unknown function (DUF3645) | Protein of unknown function DUF3645 |
| Protein of unknown function (DUF3638) | Protein of unknown function DUF3638 | ||
| NODE_369 | g11222 | Heterokaryon incompatibility protein (HET) | Heterokaryon incompatibility |
| NODE_371 | g11231 | Shwachman-Bodian-Diamond syndrome (SBDS) protein | Ribosome maturation protein SBDS, N-terminal |
| ATP synthase alpha/beta chain, C terminal domain | ATP synthase, alpha subunit, C-terminal | ||
| ATP synthase alpha/beta family, beta-barrel domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | ||
| ATP synthase alpha/beta family, nucleotide-binding domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | ||
| NODE_371 | g11232 | V-type ATPase 116 kDa subunit family | V-type ATPase, V0 complex, 116 kDa subunit family |
| NODE_378 | g11269 | Man1-Src1p-C-terminal domain | Man1-Src1p-C-terminal domain |
| NODE_378 | g11273 | Methyltransferase domain | Methyltransferase type 11 |
| NODE_384 | g11303 | Heterokaryon incompatibility protein (HET) | Heterokaryon incompatibility |
| NODE_404 | g11391 | ATPase family associated with various cellular activities (AAA) | ATPase, AAA-type, core |
| NODE_416 | g11434 | Glycosyl hydrolase family 10 (x2) | Glycoside hydrolase family 10 domain (x2) |
| NODE_417 | g11436 | Glycosyl hydrolases family 32 N-terminal domain | Glycosyl hydrolase family 32, N-terminal |
| NODE_417 | g11437 | Sugar (and other) transporter | Major facilitator, sugar transporter-like |
| NODE_437 | g11494 | Alcohol dehydrogenase GroES-like domain | Alcohol dehydrogenase, N-terminal |
| Zinc-binding dehydrogenase | Alcohol dehydrogenase, C-terminal | ||
| NODE_437 | g11495 | Eukaryotic elongation factor 5 A hypusine, DNA-binding OB fold | Translation elongation factor, IF5A C-terminal |
| Elongation factor P (EF-P) KOW-like domain | Translation elongation factor, KOW-like | ||
| NODE_450 | g11526 | Cation transporter/ATPase, N-terminus | Cation-transporting P-type ATPase, N-terminal |
| NODE_450 | g11527 | MAC/Perforin domain | Membrane attack complex component/perforin (MACPF) domain |
| NODE_454 | g11536 | Ankyrin repeats (3 copies) (x3) | Ankyrin repeat-containing domain (x3) |
| Ankyrin repeats (many copies) | |||
| Fungal specific transcription factor domain | Transcription factor domain, fungi | ||
| AAA domain | AAA + ATPase domain | ||
| NODE_468 | g11564 | Protein of unknown function (DUF3435) | Protein of unknown function DUF3435 |
| NODE_468 | g11565 | Protein kinase domain | Protein kinase domain |
| NODE_472 | g11572 | Protein of unknown function (DUF3435) | Protein of unknown function DUF3435 |
| NODE_476 | g11576 | NmrA-like family | NmrA-like domain |
| NODE_479 | g11582 | Glycosyltransferase family 25 (LPS biosynthesis protein) | Glycosyl transferase, family 25 |
| NODE_479 | g11583 | Glycosyltransferase sugar-binding region containing DXD motif | Glycosyltransferase, DXD sugar-binding motif |
| NODE_486 | g11594 | Ankyrin repeats (3 copies) (x2) | Ankyrin repeat-containing domain (x2) |
| NODE_486 | g11595 | Glycosyl transferase family 8 | Glycosyl transferase, family 8 |
| NODE_494 | g11605 | Phosphotransferase enzyme family | Aminoglycoside phosphotransferase |
| NODE_498 | g11612 | NACHT domain | |
| NODE_501 | g11617 | Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 | Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2 |
| NODE_513 | g11632 | Haloacid dehalogenase-like hydrolase | |
| Cation transporting ATPase, C-terminus | Cation-transporting P-type ATPase, C-terminal | ||
| NODE_541 | g11662 | T5orf172 domain | Bacteriophage T5, Orf172 DNA-binding |
| NODE_573 | g11683 | LysM domain (x3) | LysM domain (x3) |
| NODE_578 | g11688 | Sodium/hydrogen exchanger family | Cation/H+ exchanger |
| NODE_612 | g11709 | Sugar (and other) transporter | Major facilitator, sugar transporter-like |
| NODE_654 | g11732 | Phosphorylase superfamily | Nucleoside phosphorylase domain |
| NODE_691 | g11743 | Peptidase family M49 | |
| NODE_713 | g11751 | BTB/POZ domain | BTB/POZ domain |
| NODE_860 | g11779 | E1-E2 ATPase |
Genes containing 2, 3, and 8 identical PFAM or InterPro domain are denoted as x2, x3, and x8, respectively. Genes g1679, g4146, g4147, g4148, g4149, g4150, g4151, g4152, g4154, g4158, g4159, g4160, g9173, g9175, g9177, g10449, g10540, g10542, g10543, g10544, g10545, g10547, g10913, g10943, g10944, g10945, g10946, g10947, g11018, g11020, g11270, g11271, g11272, g11307, g11438, g11487, g11503, g11504, g11566, g11588, g11660, g11673, g11674, g11681, g11682, g11699, g11707, g11714, g11716, g11729, g11733, g11736, g11760, g11765, g11777, and g11780 contained no predicted PFAM or InterPro classification.