Table 1.
Genes with accelerated evolution in the pinniped lineage. H1_fg_omega: dN/dS value (ω) on foreground given H1 (ω varies across the branches); H0_lnl: log likelihood given H0 (ω does not vary across the branches); H1_lnl: log likelihood given H1; H0_lnl: log likelihood given H0.
| Gene | H1_fg_omega (ω2) | Proportion (H1) (1 – p0 – p1)p1/(p0 + p1) | H0_lnl | H1_lnl | Likelihood ratio | p-value | Adjusted p-value | # of positively selected sites* |
|---|---|---|---|---|---|---|---|---|
| TMEM132B | 3.81581 | 0.01666 | −6438.78 | −6419.68 | 38.20475 | 6.37E-10 | 1.18E-06 | 52 (22) |
| PARP1 | 4.76894 | 0.00604 | −5357.53 | −5341.29 | 32.48145 | 1.20E-08 | 2.22E-05 | 23 (22) |
| TECTA | 3.67139 | 0.00194 | −12076.1 | −12060.4 | 31.42787 | 2.07E-08 | 3.83E-05 | 18 (14) |
| FUBP3 | 4.89809 | 0.01916 | −4880.95 | −4869.76 | 22.38143 | 2.24E-06 | 0.004144 | 12 (1) |
| IGF2BP1 | 4.96893 | 0.00201 | −4448.2 | −4438.13 | 20.13898 | 7.20E-06 | 0.01332 | 19 (2) |
| SPEG | 4.81594 | 0.00254 | −11218.8 | −11209.4 | 18.85029 | 1.41E-05 | 0.026085 | 13 (13) |
| ADAMTS5 | 4.38148 | 0.00124 | −4320.48 | −4311.43 | 18.1014 | 2.09E-05 | 0.038665 | 8 (0) |
*Number of positively selected sites with a BEB of >0.95. The numbers of positively selected sites within domain regions are shown in parentheses.