FIG 6.

Expression differences of the different polymorphic regions. (A) Overview of polymorphic regions. ^aIndel references are made to the Bl-04 genome. ^bLocus tags in parenthesis are genes associated with intergenic indels that were assessed in the expression data. ^eIndels are errors in the Bl-04 genome. ^fIndel could not be confirmed by PCR or transcript read analysis. (B) Expression differences at each locus between the strains showing upregulation in Bl-04 (blue) or HN019 (red). (C) Expression differences at each locus within the strains show upregulation in the control ISO_0 (green) or treatments (orange).