Table 1.
Basic assembly statistics (> 300 bp) compared to existing small-spotted catshark transcriptomes
KEA | MEA | RAW | MCF | HTMCF | |
---|---|---|---|---|---|
Total base count | 45,214,552 | 110,464,397 | 275,457,098 | 275,410,367 | 80,066,015 |
Total contig count | 58,273 | 86,006 | 388,800 | 387,579 | 102,228 |
N50a contig length | 965 | 2316 | 786 | 791 | 969 |
L50b contig count | 12,721 | 13,518 | 89,641 | 88,973 | 20,814 |
GC content (%) | 45.69 | 43.9 | 42.09 | 42.1 | 42.03 |
aN50: the length of the shortest contig included when the least number of contigs are used to make up 50% of the total assembly length
bL50: the total contig count when the least number of contigs are used to make up 50% of the total assembly length