Table 1. Summary of the sequencing reads of the T. confusum transcriptome and corresponding assemblies and statistics of the annotation results.
Control | Treatment | ||
---|---|---|---|
Raw reads | Total number | 64,760,250 | 61,519,782 |
Total number | 45,114,010 | 44,228,536 | |
Clean reads | Total nucleotides (nt) | 4,511,401,000 | 4,422,853,600 |
Q20 (%) | 97.38 | 97.55 | |
Contigs | Total number | 34,747 | 33,988 |
Mean length (bp) | 1,043 | 1,042 | |
Primary unigenes | Total number | 26,367 | 25,883 |
Final unigenes | Total number | 28,885 | |
Total length (bp) | 36,998,010 | ||
Mean length (bp) | 1,280 | ||
N50 (bp) | 2,097 | ||
GC (%) | 37.39 | ||
Number < 600 bp | 38.54 | ||
Number ≥ 600 bp | 61.46 | ||
Annotation | Nr | 23,160 (80.18%) | |
Nt | 9,941 (34.42%) | ||
COG | 9,451 (32.72%) | ||
KEGG | 18,074 (62.57%) | ||
GO | 6,333 (21.92%) | ||
Swiss-Prot | 18,187 (62.96%) | ||
InterPro | 17,837 (61.75%) | ||
All databases | 23,571 (81.60%) |