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. 2018 Nov 13;6:e5693. doi: 10.7717/peerj.5693

Table 1. Summary of the sequencing reads of the T. confusum transcriptome and corresponding assemblies and statistics of the annotation results.

Control Treatment
Raw reads Total number 64,760,250 61,519,782
Total number 45,114,010 44,228,536
Clean reads Total nucleotides (nt) 4,511,401,000 4,422,853,600
Q20 (%) 97.38 97.55
Contigs Total number 34,747 33,988
Mean length (bp) 1,043 1,042
Primary unigenes Total number 26,367 25,883
Final unigenes Total number 28,885
Total length (bp) 36,998,010
Mean length (bp) 1,280
N50 (bp) 2,097
GC (%) 37.39
Number < 600 bp 38.54
Number ≥ 600 bp 61.46
Annotation Nr 23,160 (80.18%)
Nt 9,941 (34.42%)
COG 9,451 (32.72%)
KEGG 18,074 (62.57%)
GO 6,333 (21.92%)
Swiss-Prot 18,187 (62.96%)
InterPro 17,837 (61.75%)
All databases 23,571 (81.60%)