Table 2.

The putative single nucleotide variants and deletion mutations in Escherichia coli E-DB compared with E-FQ and E-XS

Reference position	Gene and product	Nucleotide sequence	Amino acid sequence
E. coli E-FQ
contig_44 3,490	acrB, multidrug efflux RND transporter permease subunit	C1858T	R620C
contig_44 25,952	lon, ATP-dependent protease La	G1148A	P403L
contig_128 9,752	ISL3, transposase	G191T	A64S
contig_12 1,269	radC, DNA repair protein	G174A	V247I
contig_147 2,477	Not an ORF	T2477C	None
E. coli E-XS
contig_77 52,399	acrB, multidrug efflux RND transporter permease subunit	C1858T	R620C
contig_77 29,937	lon, ATP-dependent protease La	G1148A	P403L
contig_43 206	orfA, IS1 transposase	T204C	R68R
contig_43 209	orfA, IS1 transposase	C207T	H69H
contig_53 80	Not an ORF	A80G	None

Abbreviation: ORF, open reading frame.