Table 3.
List of 20 genes with highest fold change (fold change greater than log2 4.0) uniquely identified by RNA‐Seq but not the ATH1 microarray
| Gene | Log2 FC | Symbol | Short description |
|---|---|---|---|
| AT5G07322 | 7.72 | NA | Other RNA [Source:TAIR;Acc:AT5G07322] |
| AT3G09925 | 7.35 | NA | Pollen Ole e 1 allergen and extensin family protein [Source:TAIR;Acc:AT3G09925] |
| AT1G28815 | 7.15 | NA | Unknown protein; has five BLAST hits to five proteins in two species: Archae ‐ 0; Bacteria ‐ 0; Metazoa ‐ 0; Fungi ‐ 0; Plants ‐ 5; Viruses ‐ 0; Other Eukaryotes ‐ 0 (source: NCBI BLink). [Source:TAIR;Acc:AT1G28815] |
| AT5G48920 | 7.06 | TED7 | Tracheary element differentiation‐related 7 [Source:TAIR;Acc:AT5G48920] |
| AT5G43350 | 6.94 | ATPT1 | Phosphate transporter 1;1 [Source:TAIR;Acc:AT5G43350] |
| AT2G30395 | 6.92 | ATOFP17 | Ovate family protein 17 [Source:TAIR;Acc:AT2G30395] |
| AT3G24460 | 6.81 | NA | Serinc‐domain containing serine and sphingolipid biosynthesis protein [Source:TAIR;Acc:AT3G24460] |
| AT5G57887 | 6.63 | NA | Unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae ‐ 12; Bacteria ‐ 1396; Metazoa ‐ 17338; Fungi ‐ 3422; /…/ ‐ 5037; Viruses ‐ 0; Other Eukaryotes ‐ 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G57887] |
| AT2G28671 | 6.50 | NA | Unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae ‐ 12; Bacteria ‐ 1396; Metazoa ‐ 17338; Fungi ‐ /…/ Plants ‐ 5037; Viruses ‐ 0; Other Eukaryotes ‐ 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G28671] |
| AT1G77885 | 6.45 | NA | Unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22065.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ‐ 798; Bacteria ‐ 22429; Metazoa ‐ 974; Fungi ‐ 991; Plants ‐ 531; Viruses ‐ 0; Other Euk /…/s ‐ 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT1G77885] |
| AT5G19230 | 6.17 | NA | Glycoprotein membrane precursor GPI‐anchored [Source:TAIR;Acc:AT5G19230] |
| AT4G23500 | 5.85 | NA | Pectin lyase‐like superfamily protein [Source:TAIR;Acc:AT4G23500] |
| AT4G27950 | −4.04 | CRF4 | Cytokinin response factor 4 [Source:TAIR;Acc:AT4G27950] |
| AT3G63430 | −4.10 | TRM5 | TON1 RECRUITING MOTIF 5, TRM5 zinc finger CCCH domain protein;(source:Araport11) |
| AT5G01445 | −4.13 | NA | Unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 5 Blast hits to 5 proteins in 2 species: Archae ‐ 0; Bacteria ‐ 0; Metazoa ‐ 0; Fungi ‐ 0; Plants ‐ 5; Viruses ‐ 0; Ot /…/karyotes ‐ 0 (source: NCBI BLink). [Source:TAIR;Acc:AT5G01445] |
| AT5G41071 | −4.20 | NA | Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae ‐ 12; Bacteria ‐ 1396; Metazoa ‐ 17338; Fungi ‐ 3422; Plants ‐ 5037; Viruses ‐ 0; Other Eukaryotes ‐ 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G41071] |
| AT5G07140 | −4.50 | NA | Protein kinase superfamily protein [Source:TAIR;Acc:AT5G07140] |
| AT4G33270 | −4.74 | CDC20.1 | Transducin family protein / WD‐40 repeat family protein [Source:TAIR;Acc:AT4G33270] |
| AT4G22235 | −5.24 | NA | Arabidopsis defensin‐like protein [Source:TAIR;Acc:AT4G22235] |
| AT2G22496 | −5.56 | MIR779A | MIR779a; miRNA [Source:TAIR;Acc:AT2G22496] |
NA = not applicable.