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. 2018 Nov 12;9:1550. doi: 10.3389/fpls.2018.01550

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Copyright © 2018 Mohammadi-Dehcheshmeh, Niazi, Ebrahimi, Tahsili, Nurollah, Ebrahimi Khaksefid, Ebrahimi and Ebrahimie.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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High correspondence between RNA-seq data of Arbuscular mycorrhiza (AM) colonization and the identified AM colonization meta-signature in this study, derived from integration of meta-analysis with supervised attribute weighting models. (A) 51 out of 73 (70%) of the upregulated genes in the developed transcriptomic biosignature ofcolonization were also upregulated in the RNA-seq data of AM colonization with FDR-corrected p < 0.01. (B) The identified AM colonization meta-signature was able to accurately discriminate AM-inoculated samples from non-inoculated ones. (C) Visualization of the expression of some important genes of AM colonization signature in original experiments (based on standardized Z-value of expression) and RNA-seq experiment [based on RPKM (Reads Per Kilobase of transcript per Million mapped reads)].