Table 5.
SNP ID | Genotype | Colon, n (frequency) | Controls, n (frequency) | OR | 95% CI | χ2 value | P-value* |
---|---|---|---|---|---|---|---|
| |||||||
Male vs control | |||||||
| |||||||
rs3804099 | CC | 10 (0.16) | 13 (0.22) | Ref | |||
CT | 31 (0.50) | 26 (0.45) | 1.55 | 0.58–4.11 | 0.78 | 0.38 | |
TT | 21 (0.34) | 19 (0.33) | 1.43 | 0.51–4.03 | 0.48 | 0.49 | |
CT + TT | 52 (0.84) | 45 (0.78) | 1.50 | 0.60–3.75 | 0.76 | 0.38 | |
C | 51 (0.41) | 52 (0.45) | Ref | ||||
T | 73 (0.59) | 64 (0.55) | 1.16 | 0.70–1.94 | 0.33 | 0.56 | |
| |||||||
rs3804100 | CC | 1 (0.02) | 2 (0.04) | Ref | |||
CT | 8 (0.12) | 9 (0.15) | 1.78 | 0.13–23.52 | 0.19 | 0.66 | |
TT | 56 (0.86) | 48 (0.81) | 2.33 | 0.20–26.54 | 0.49 | 0.48 | |
CT + TT | 64 (0.98) | 57 (0.86) | 2.25 | 0.20–25.43 | 0.45 | 0.50 | |
C | 10 (0.08) | 13 (0.11) | Ref | ||||
T | 120 (0.92) | 105 (0.89) | 1.49 | 0.63–3.53 | 0.81 | 0.37 | |
| |||||||
rs4696480 | AA | 19 (0.32) | 14 (0.27) | Ref | |||
AT | 25 (0.42) | 23 (0.44) | 0.80 | 0.33–1.96 | 0.24 | 0.63 | |
TT | 15 (0.26) | 15 (0.29) | 0.74 | 0.27–1.99 | 0.36 | 0.55 | |
AT + TT | 40 (0.68) | 38 (0.73) | 0.78 | 0.34–1.76 | 0.37 | 0.54 | |
A | 63 (0.53) | 51 (0.49) | Ref | ||||
T | 55 (0.47) | 53 (0.51) | 0.84 | 0.50–1.42 | 0.42 | 0.52 | |
| |||||||
Female vs control | |||||||
| |||||||
rs3804099 | CC | 9 (0.18) | 13 (0.31) | Ref | 0.46–3.748 | 0.25 | 0.62 |
CT | 19 (0.39) | 21 (0.50) | 1.31 | 1.17–12.30 | 5.13 | 0.023* | |
TT | 21 (0.43) | 8 (0.19) | 3.79 | 0.75–5.28 | 1.95 | 0.16 | |
CT + TT | 40 (0.82) | 29 (0.69) | 1.99 | 1.163.79 | 6.03 | 0.014* | |
C | 37 (0.38) | 47 (0.56) | Ref | ||||
T | 61 (0.62) | 37 (0.44) | 2.09 | ||||
| |||||||
rs3804100 | CC | 1 (0.02) | 0 (0) | Ref | 0.007–5.60 | 1.61 | 0.20 |
CT | 5 (0.10) | 9 (0.21) | 0.19 | 0.02–10.97 | 0.76 | 0.38 | |
TT | 43 (0.88) | 33 (0.79) | 0.43 | 0.02–9.59 | 0.87 | 0.35 | |
CT + TT | 48 (0.98) | 42 (1) | 0.38 | 0.56–4.39 | 0.72 | 0.40 | |
C | 7 (0.08) | 9 (0.11) | Ref | ||||
T | 91 (0.92) | 75 (0.89) | 1.56 | ||||
| |||||||
rs4696480 | AA | 8 (0.17) | 10 (0.26) | Ref | |||
AT | 24 (0.51) | 18 (0.48) | 1.67 | 0.55–5.07 | 0.82 | 0.37 | |
TT | 15 (0.32) | 10 (0.26) | 1.88 | 0.55–6.39 | 1.02 | 0.317 | |
AT + TT | 39 (0.83) | 28 (0.74) | 1.74 | 0.61–4.97 | 1.09 | 0.30 | |
A | 40 (0.43) | 38 (0.50) | Ref | ||||
T | 54 (0.57) | 38 (0.50) | 1.35 | 0.74–2.48 | 0.94 | 0.33 |
Note:
P<0.05.
Abbreviations: Ref, reference; SNP, single-nucleotide polymorphism.