Table 6.
SNP ID | Genotype | Colon, n (frequency) | Controls, n (frequency) | OR | 95% CI | χ2 value | P-value* |
---|---|---|---|---|---|---|---|
| |||||||
Colon area vs control | |||||||
| |||||||
rs3804099 | CC | 14 (0.21) | 27 (0.26) | Ref | |||
CT | 27 (0.42) | 47 (0.47) | 1.11 | 0.50–2.47 | 0.06 | 0.80 | |
TT | 24 (0.37) | 28 (0.27) | 1.65 | 0.71–3.85 | 1.37 | 0.24 | |
CT + TT | 51 (0.79) (0.) | 75 (0.74) | 1.31 | 0.63–2.74 | 0.52 | 0.47 | |
C | 55 (0.42) | 101 (0.49) | Ref | ||||
T | 75 (0.58) | 103 (0.51) | 1.34 | 0.86–2.08 | 1.65 | 0.20 | |
| |||||||
rs3804100 | CC | 2 (0.03) | 2 (0.02) | Ref | |||
CT | 7 (0.10) | 19 (0.18) | 0.37 | 0.04–3.14 | 0.88 | 0.35 | |
TT | 60 (0.87) | 82 (0.80) | 0.73 | 0.10–5.34 | 0.10 | 0.76 | |
CT + TT | 67 (0.97) | 101 (0.98) | 0.66 | 0.09–4.83 | 0.17 | 0.68 | |
C | 11 (0.08) | 23 (0.11) | Ref | ||||
T | 127 (0.92) | 183 (0.89) | 1.45 | 0.68–3.08 | 0.95 | 0.33 | |
| |||||||
rs4696480 | AA | 15 (0.25) | 25 (0.27) | Ref | |||
AT | 25 (0.42) | 41 (0.45) | 1.02 | 0.45–2.27 | 0.00 | 0.97 | |
TT | 20 (0.33) | 26 (0.28) | 1.28 | 0.54–3.05 | 0.32 | 0.57 | |
AT + TT | 45 (0.75) | 67 (0.73) | 1.12 | 0.53–2.35 | 0.09 | 0.77 | |
A | 55 (0.46) | 91 (0.49) | Ref | ||||
T | 65 (0.54) | 93 (0.51) | 1.16 | 0.73–1.83 | 0.38 | 0.54 | |
| |||||||
Rectum area vs control | |||||||
| |||||||
rs3804099 | CC | 4 (0.12) | 27 (0.26) | Ref | |||
CT | 18 (0.53) | 47 (0.47) | 2.59 | 0.79–8.43 | 2.60 | 0.11 | |
TT | 12 (0.35) | 28 (0.27) | 2.89 | 0.83–10.09 | 2.92 | 0.09 | |
CT + TT | 30 (0.82) | 75 (0.74) | 2.70 | 0.87–8.38 | 3.13 | 0.077 | |
C | 26 (0.38) | 101 (0.49) | Ref | ||||
T | 42 (0.62) | 103 (0.51) | 1.58 | 0.90–2.78 | 2.60 | 0.11 | |
| |||||||
rs3804100 | CC | 0 (0.0) | 2 (0.02) | Ref | |||
CT | 5 (0.15) | 19 (0.18) | 1.41 | 0.06–33.93 | 0.52 | 0.47 | |
TT | 28 (0.85) | 82 (0.80) | 1.73 | 0.08–37.06 | 0.68 | 0.41 | |
CT + TT | 33 (1) | 101 (0.98) | 1.65 | 0.08–35.24 | 0.65 | 0.42 | |
C | 5 (0.08) | 23 (0.11) | Ref | ||||
T | 61 (0.92) | 183 (0.89) | 1.53 | 0.56–4.20 | 0.70 | 0.40 | |
| |||||||
rs4696480 | AA | 8 (0.23) | 25 (0.27) | Ref | |||
AT | 19 (0.56) | 41 (0.45) | 1.45 | 0.55–3.80 | 0.57 | 0.45 | |
TT | 7 (0.21) | 26 (0.28) | 0.84 | 0.27–2.67 | 0.09 | 0.77 | |
AT + TT | 26 (0.77) | 67 (0.73) | 1.21 | 0.49–3.0 | 0.17 | 0.68 | |
A | 35 (0.51) | 91 (0.49) | Ref | ||||
T | 33 (0.49) | 93 (0.51) | 0.92 | 0.53–1.6 | 0.08 | 0.78 |
Note:
P<0.05.
Abbreviations: Ref, reference; SNP, single-nucleotide polymorphism.