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. 2018 Nov 15;175(5):1418–1429.e9. doi: 10.1016/j.cell.2018.09.050
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins
Bathophenantrolinedisulfonic acid disodium salt hydrate (BPS) Sigma-Aldrich Cat#146617; CAS 52746-49-3
Hygromycin B Wisent Bioproducts Cat#450-141-XL; CAS 31282-04-9
Metformin-HCl Jean Coutu CAS 1115-70-4
Methotrexate BioShop Canada Cat#MTX440; CAS 59-05-2
Nourseothricin-dihydrogen sulfate Werner Bioagents Cat#5.005.000; CAS 96736-11-7
Rapamycin BioShop Canada Cat#RAP004; CAS 53123-88-9
Ethidium bromide BioShop Canada Cat#ETB444.50; CAS 1239-45-8
Carbonyl cyanide m-chlorophenylhydrazone (CCCP) Sigma-Aldrich Cat#C2759-250MG; CAS 555-60-2
Antimycin A Sigma-Aldrich Cat#A8674-25MG; CAS 1397-94-0
Oligomycin Sigma-Aldrich Cat#495455-10MG; CAS 1404-19-9
Acetonitrile Greyhound Cat#Bio-012041; CAS 75-05-8
Water ULC MS Greyhound Cat#Bio-23214102; CAS 7732-18-5
Formic acid Fluka Cat#O6454; CAS 64-18-6
Ammonium acetate Greyhound Cat#Bio-012441; CAS 631-61-8
Acetic acid Fluka Cat#49199-50ml; CAS 64-19-7
Ammonium hydroxide Sigma-Aldrich Cat#221228-100ml; CAS 1336-21-6
dATP/dGTP/dTTP/dCTP Bioline Cat#39025
Internal standard mix for ICP-MS Agilent Cat#5188-6525
Multi-element calibration standard-2A Agilent Cat#8500-6940
Experimental Models: Organisms/Strains
S. cerevisiae: BY4741 Brachmann et al., 1998 ATCC 201388
S. cerevisiae: mDHFR PCA strain collection Tarassov et al., 2008 N/A
S. cerevisiae: deletion strain collection Giaever et al., 2002 N/A
Recombinant DNA
Plasmid: pHLUM Mülleder et al., 2012 N/A
Plasmid: pYes2-PACT1-pHluorin Orij et al., 2009 N/A
Plasmid: pYes2-PACT1-mtpHluorin Orij et al., 2009 N/A
Software and Algorithms
Fiji (v1.45b) Schindelin et al., 2012 http://imagej.net/Fiji/Downloads;
RRID: SCR_002285
R (v3.2.3) The R project https://www.r-project.org/;
RRID: SCR_001905
Cytoscape Smoot et al., 2011 http://cytoscape.org;
RRID: SCR_003032
limma (R) Bolstad et al., 2003, Ritchie et al., 2015 http://bioconductor.org/packages/release/bioc/html/limma.html;
RRID: SCR_010943
affy (R) Bolstad et al., 2003, Gautier et al., 2004 http://bioconductor.org/packages/release/bioc/html/affy.html;
RRID: SCR_012835
cyber-T (R) Baldi and Long, 2001, Kayala and Baldi, 2012 N/A
GOstats (R) Falcon and Gentleman, 2007 http://bioconductor.org/packages/release/bioc/html/GOstats.html
biomaRt (R) Durinck et al., 2009 http://bioconductor.org/packages/release/bioc/html/biomaRt.html
EnrichmentMap (Cytoscape) Merico et al., 2010 http://apps.cytoscape.org/apps/enrichmentmap
AutoAnnotate (Cytoscape) Kucera et al., 2016 http://apps.cytoscape.org/apps/autoannotate
MassHunter Agilent https://www.agilent.com/en/products/software-informatics/masshunter-suite/masshunter/masshunter-software; RRID: SCR_015040