Table 2.
Summary of DLS optical map assembly and merging with ONT contigs
| Original DLS genome map | Original ONT contigs | ONT contigs in hybrid scaffold | ONT contigs not in hybrid scaffold | Hybrid scaffolds | Hybrid scaffolds after correction | |
|---|---|---|---|---|---|---|
| Number of contigs/scaffolds | 79 | 723 | 500 | 363 | 30 | 29 |
| Total length (Mbps) | 719.339 | 671.867 | 644.44 | 25.117 | 661.06 | 661.16 |
| Minimum length (Mbps) | 0.225 | 0.009 | 0.058 | 0.00006 | 0.086 | 0.115 |
| Maximum length (Mbps) | 47.659 | 16.337 | 16.337 | 1.549 | 52.621 | 46.577 |
| N50 length (Mbps) | 33.773 | 3.053 | 2.991 | 0.13 | 33.35 | 33.28 |
Merging of DLS optical maps with ONT contigs produced a hybrid assembly made of 29 scaffolds, totaling 661.16 Mbps and with a scaffold N50 value of 33.28 Mbps