Table 1.
Long read and differential expression analysis results aggregated by scaffold (MA ID).
| Gene name | MA_ID | Number of uniquely mapping CCS reads | Number of significant DE transcripts | Number of transcripts |
|---|---|---|---|---|
| DAL1 | MA_128164 | 20 | 15 | 80 |
| DAL1 | MA_369170 | 0 | 0 | 6 |
| DAL10 | MA_15122short | 0 | 0 | 6 |
| DAL10 | MA_15122long | 0 | 25 | 78 |
| DAL11 | MA_18048short | 0 | 0 | 7 |
| DAL11 | MA_18048long | 0 | 6 | 15 |
| DAL12 | MA_13933short | 0 | 4 | 8 |
| DAL12 | MA_13933long | 0 | 12 | 20 |
| DAL13 | MA_130755 | 7 | 9 | 25 |
| DAL13_like_a | MA_2191711 | 0 | 2 | 4 |
| DAL13_like_b | MA_8198323 | 0 | 0 | 3 |
| DAL19 | MA_16120 | 3 | 1 | 20 |
| DAL19 | MA_162822_long | 0 | 13 | 47 |
| DAL19 | MA_329880 | 2 | 2 | 22 |
| DAL19 | MA_162822short | 0 | 1 | 1 |
| DAL21 | MA_126898long | 0 | 4 | 17 |
| DAL21 | MA_126898short | 0 | 0 | 4 |
| DAL3 | MA_141872 | 10 | 6 | 23 |
| DAL3 | MA_10256834 | 0 | 6 | 32 |
| DAL3_like_a | MA_19007 | 0 | 1 | 17 |
| DAL3_like_a | MA_32676 | 1 | 1 | 16 |
| DAL31 | MA_46639 | 7 | 2 | 22 |
| DAL32 | MA_7858089 | 0 | 2 | 16 |
| DAL32 | MA_138440long | 2 | 5 | 39 |
| DAL32 | MA_138440short | 0 | 0 | 4 |
| DAL33 | MA_10079394 | 0 | 13 | 92 |
| DAL33 | MA_276701 | 3 | 1 | 31 |
| DAL35 | MA_9284799 | 1 | 3 | 20 |
| DAL37 | MA_18942 | 10 | 0 | 20 |
| DAL38 | A_20180long | 6 | 1 | 11 |
| DAL38 | A_20180short | 0 | 0 | 1 |
| DAL39 | MA_94049 | 0 | 4 | 25 |
| DAL4 | MA_101463 | 9 | 2 | 110 |
| DAL4 | MA_35712 | 0 | 1 | 29 |
| DAL40/JTL | MA_10432602 | 3 | 0 | 14 |
| DAL41 | MA_57186 | 1 | 7 | 26 |
| DAL5 | MA_32019 | 0 | 0 | 3 |
| DAL9 | MA_6279308 | 5 | 3 | 19 |
| Sum | 90 | 152 | 933 | |
MA_ID: scaffold identification in P. abies genome assembly v1.0. Number of uniquely mapping CCS reads: Counts of long reads mapping uniquely to transcripts associated with a single scaffold. Number of significant DE transcripts: Number of significant associations at FDR 0.1 of transcript differential expression in eight bud samples, across bud types, and aggregated by MA ID. Of 38 groups of transcripts assigned to a single MA ID, 28 groups contained at least one transcript with differential expression across vegetative, male, and female buds at FDR 0.1. Number of transcripts: Number of transcripts assigned to each MA ID.