Fig. 4.

Example of the SWS_PPM method based on SLiM #57 along with its PSPM. An example of SWS_PPM based on SLiM #57 along with its position-specific probability matrix. We considered every possible sub-sequence in a sequence as a potential site for a motif of the training set. Each time we move the SLiM window to score the site using the scores of amino acids based on its PSPM. At the end of each sequence we add up all scores of sites together as the score of the SLiM on this protein sequence