Fig. 5.

Example of the SWS_RE method based on SLiM # 1. An example of SWS_RE based on SLiM #1 found in the dataset obtained by CM output by MEME. We considered every possible sub-sequence in a sequence as a potential site for a motif of the training set. We then move the SLiM window and use regular expression to check if the SLiM pattern matches each site. Then we do not consider the potential site as a site; otherwise, we score the site. At the end of each sequence we add up all scores of sites together as the score of the SLiM for this protein sequence