Table 1.
Associations between graph entities and biological information
| Type | Label | # | Biological information | Source |
|---|---|---|---|---|
| Nodes | Gene | 59839 | Genes | NCBI entrez genes |
| Go | 43969 | Functional annotations | Gene ontology | |
| Protein | 20193 | Proteins | UniProtKB | |
| Pathway | 1920 | Pathways | Reactome | |
| MiRNA | 28645 | miRNA precursors | miRBase | |
| MiRNAmature | 38558 | miRNA matures | miRBase | |
| MiRNAsnp | 236 | miRNA SNPs | miRNASNP | |
| Cancer | 107 | Cancers | mirCancer | |
| ProteinName | 219132 | Proteins accessions | UniProtKB | |
| GeneName | 115027 | Genes symbols | HGNC | |
| Interaction | 913285 | miRNA-target interactions | mirTarBase,miRanda | |
| Relations | ANNOTATES | 514528 | Links to annotated entities | Gene ontology |
| CONTAINS | 99979 | Links to entities in pathways | Reactome | |
| PRECURSOR_OF | 38558 | Precursors-matures relations | miRBase | |
| HAS_SNP | 236 | miRNAs-mutations relations | miRNASNP | |
| SYNONYM_OF | 115027 | Symbols-genes relations | HGNC | |
| REFERS_TO | 219132 | Accessions-proteins relations | UniProtKB | |
| INTERACTING_GENE | 913285 | Genes-interactions relations | mirTarBase,miRanda,miRNASNP | |
| INTERACTING_MIRNA | 657904 | miRNA-interactions relations | mirTarBase,miRanda | |
| INTERACTING_SNP | 255381 | SNPs-interactions relations | miRNASNP |