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. 2018 Nov 20;19(Suppl 14):414. doi: 10.1186/s12859-018-2381-1

Table 1.

Distance metrics that measure the average distance between the atoms of superimposed proteins

Similarity metric Method or software
RMSD MAMMOTH [55], LGA/GDT [56]
p-value [57]
SAS score & GSAS score [58]
TM-score TM-align, Fr-TM-align [59]
S score MatAlign [60]
STRUCTAL score LOVOalign [61]
Q-score SSM [62]