Table 2.
Up-regulated genes related to photosynthesis
| Process | ID_Transcript | Proteins | Fold change |
|---|---|---|---|
| PSII | TRINITY_DN28356_c0_g7_i2 | PsbA | 3.3 |
| TRINITY_DN26114_c0_g9_i1 | PsbB | 2.0 | |
| TRINITY_DN24036_c0_g1_i1 | PsbC | 2.5 | |
| TRINITY_DN51574_c0_g1_i1 | PsbJ | 3.2 | |
| TRINITY_DN25152_c1_g6_i1 | PsbO | 3.0 | |
| TRINITY_DN25152_c1_g3_i1 | PsbO | 2.8 | |
| TRINITY_DN23656_c0_g2_i2 | PsbP | 2.7 | |
| TRINITY_DN30969_c0_g1_i1 | PsbP | 2.9 | |
| TRINITY_DN134452_c0_g1_i1 | PsbR | 2.9 | |
| TRINITY_DN24151_c1_g3_i1 | PsbS | 2.2 | |
| TRINITY_DN22768_c0_g2_i1 | PsbW | 3.0 | |
| TRINITY_DN21681_c1_g1_i2 | PsbW | 3.3 | |
| TRINITY_DN21681_c1_g1_i1 | PsbW | 3.2 | |
| TRINITY_DN22451_c0_g1_i5 | PsbZ | 2.8 | |
| LHCII | TRINITY_DN28384_c2_g10_i1 | Chlorophyll a-b binding protein 1D (lhcb1) | 3.3 |
| TRINITY_DN24974_c1_g9_i1 | Chlorophyll a-b binding protein 1D (lhcb1) | 2.9 | |
| TRINITY_DN28161_c1_g6_i2 | Chlorophyll a-b binding protein 8 (lhcb2-like) | 3.2 | |
| TRINITY_DN23399_c0_g1_i2 | Chlorophyll a-b binding protein CP29 (lhcb4) | 2.9 | |
| TRINITY_DN23399_c0_g1_i3 | Chlorophyll a-b binding protein CP29 (lhcb4) | 2.9 | |
| TRINITY_DN23399_c0_g1_i1 | Chlorophyll a-b binding protein CP29 (lhcb4) | 2.8 | |
| TRINITY_DN25769_c2_g3_i4 | Chlorophyll a-b binding protein L1818 (lhcb4-like) | 3.4 | |
| TRINITY_DN25769_c2_g3_i2 | Chlorophyll a-b binding protein L1818 (lhcb4-like) | 3.1 | |
| TRINITY_DN23036_c1_g1_i8 | Fucoxanthin binding protein A | 2.8 | |
| TRINITY_DN23036_c1_g1_i5 | Fucoxanthin binding protein A | 2.8 | |
| TRINITY_DN28382_c2_g1_i8 | Fucoxanthin binding protein B | 3.0 | |
| TRINITY_DN28382_c2_g1_i7 | Fucoxanthin binding protein B | 2.7 | |
| TRINITY_DN25548_c0_g1_i1 | Solanesyl diphosphate synthase 1 | 3.2 | |
| TRINITY_DN25548_c0_g1_i2 | Solanesyl-diphosphate synthase 3 | 3.3 | |
| TRINITY_DN25548_c0_g1_i3 | Solanesyl-diphosphate synthase 3 | 3.2 | |
| TRINITY_DN25548_c0_g1_i7 | Solanesyl-diphosphate synthase 3 | 3.4 | |
| Cyt b6-f | TRINITY_DN27161_c0_g1_i10 | Iron-sulfur subunit (petC) | 3.7 |
| TRINITY_DN27161_c0_g1_i1 | Iron-sulfur subunit (petC) | 3.1 | |
| TRINITY_DN27161_c0_g1_i7 | Iron-sulfur subunit (petC) | 2.7 | |
| TRINITY_DN27161_c0_g1_i13 | Iron-sulfur subunit (petC) | 2.6 | |
| TRINITY_DN27161_c0_g1_i12 | Iron-sulfur subunit (petC) | 2.5 | |
| PSI | TRINITY_DN26298_c1_g1_i5 | PsaA | 3.4 |
| TRINITY_DN26298_c1_g1_i1 | PsaA | 3.2 | |
| TRINITY_DN26298_c1_g1_i6 | PsaA | 3.0 | |
| TRINITY_DN26298_c1_g1_i3 | PsaA | 2.6 | |
| TRINITY_DN24286_c0_g3_i1 | PsaD | 1.9 | |
| TRINITY_DN21945_c0_g2_i1 | PsaE | 3.3 | |
| TRINITY_DN23092_c0_g3_i1 | PsaF | 3.6 | |
| TRINITY_DN23521_c0_g1_i1 | PsaG | 3.6 | |
| TRINITY_DN23521_c0_g1_i2 | PsaG | 3.3 | |
| TRINITY_DN25932_c0_g1_i3 | PsaK | 3.6 | |
| TRINITY_DN21897_c0_g2_i1 | PsaO | 3.4 | |
| TRINITY_DN26200_c0_g3_i1 | Ferredoxin-NADP reductase (petH) | 2.9 | |
| TRINITY_DN24658_c0_g1_i1 | Ferredoxin-2 (petF) | 2.8 | |
| LHCI | TRINITY_DN24974_c1_g7_i2 | Chlorophyll a-b binding protein 1 | 2.8 |
| TRINITY_DN28384_c2_g5_i2 | Chlorophyll a-b binding protein 1 | 3.3 | |
| TRINITY_DN28268_c0_g2_i6 | Chlorophyll a-b binding protein 1 | 3.2 | |
| TRINITY_DN28268_c0_g2_i9 | Chlorophyll a-b binding protein 1 | 3.0 | |
| TRINITY_DN28268_c0_g2_i7 | Chlorophyll a-b binding protein 1 | 2.9 | |
| TRINITY_DN28384_c2_g17_i1 | Chlorophyll a-b binding protein 1 | 2.8 | |
| TRINITY_DN26721_c1_g6_i1 | Chlorophyll a-b binding protein 1B-21 (lhca1) | 3.2 | |
| TRINITY_DN26721_c1_g6_i2 | Chlorophyll a-b binding protein 1B-21 (lhca1) | 3.5 | |
| TRINITY_DN27296_c2_g4_i2 | Chlorophyll a-b binding protein 5 (lhca1-like) | 2.6 | |
| TRINITY_DN28268_c0_g2_i3 | Chlorophyll a-b binding protein 5 (lhca1-like) | 2.5 | |
| TRINITY_DN25309_c0_g1_i2 | Chlorophyll a-b binding protein 5 (lhca1-like) | 2.5 | |
| TRINITY_DN27296_c2_g1_i11 | Chlorophyll a-b binding protein 5 (lhca1-like) | 2.2 | |
| TRINITY_DN25604_c0_g1_i1 | Chlorophyll a-b binding protein 5 (lhca1-like) | 2.6 | |
| TRINITY_DN25604_c0_g1_i4 | Chlorophyll a-b binding protein 5 (lhca1-like) | 3.4 | |
| TRINITY_DN28161_c1_g6_i3 | Chlorophyll a-b binding protein 8 (lhca1-like) | 2.1 | |
| TRINITY_DN28161_c1_g6_i4 | Chlorophyll a-b binding protein 8 (lhca1-like) | 2.0 | |
| ATP synthase | TRINITY_DN23229_c0_g3_i1 | ATP synthase subunit b’ | 3.4 |
| TRINITY_DN24803_c0_g1_i1 | ATP synthase gamma chain | 1.4 | |
| Repair of PSII | TRINITY_DN26385_c1_g4_i3 | MET1 | 3.5 |
| TRINITY_DN25782_c0_g1_i2 | MET1 | 3.4 | |
| TRINITY_DN26385_c1_g4_i2 | MET1 | 3.3 | |
| TRINITY_DN27340_c1_g3_i2 | Deg/HtrA protease Do-like 1 | 3.3 | |
| TRINITY_DN26676_c1_g1_i1 | Deg/HtrA protease Do-like 1 | 3.3 | |
| TRINITY_DN27340_c1_g3_i3 | Deg/HtrA protease Do-like 1 | 3.2 | |
| TRINITY_DN26676_c1_g1_i12 | Deg/HtrA protease Do-like 1 | 3.2 | |
| TRINITY_DN27340_c1_g3_i4 | Deg/HtrA protease Do-like 1 | 3.2 | |
| TRINITY_DN27340_c1_g3_i1 | Deg/HtrA protease Do-like 1 | 3.1 | |
| TRINITY_DN25574_c0_g1_i4 | Deg/HtrA protease Do-like 2 | 2.9 | |
| TRINITY_DN25574_c0_g1_i7 | Deg/HtrA protease Do-like 2 | 2.7 | |
| TRINITY_DN18665_c0_g1_i1 | Deg/HtrA protease Do-like 5 | 3.0 | |
| TRINITY_DN28204_c1_g1_i2 | Deg/HtrA protease Do-like 8 | 2.7 | |
| TRINITY_DN25743_c0_g2_i1 | EGY1 | 3.2 | |
| TRINITY_DN25743_c0_g2_i2 | EGY1 | 3.0 | |
| TRINITY_DN25743_c0_g2_i3 | EGY1 | 2.9 | |
| TRINITY_DN23341_c0_g1_i1 | ATP-dependent zinc metalloprotease FTSH 1 | 3.2 | |
| TRINITY_DN27493_c2_g1_i7 | ATP-dependent zinc metalloprotease FTSH 2 | 3.1 | |
| TRINITY_DN27493_c2_g1_i1 | ATP-dependent zinc metalloprotease FTSH 2 | 3.1 | |
| TRINITY_DN27493_c2_g1_i11 | ATP-dependent zinc metalloprotease FTSH 2 | 3.1 | |
| TRINITY_DN28584_c2_g1_i4 | ATP-dependent zinc metalloprotease FTSH 5 | 3.3 | |
| TRINITY_DN27493_c2_g4_i1 | ATP-dependent zinc metalloprotease FTSH 8 | 2.9 | |
| TRINITY_DN27493_c2_g4_i3 | ATP-dependent zinc metalloprotease FTSH 8 | 2.9 | |
| TRINITY_DN24421_c0_g1_i1 | THYLAKOID FORMATION 1 | 3.2 | |
| TRINITY_DN22196_c0_g2_i1 | EMBRYO SAC DEVELOPMENT ARREST 3 | 2.9 | |
| TRINITY_DN25705_c1_g2_i2 | Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase | 2.6 | |
| Assembly of PSII | TRINITY_DN23616_c0_g1_i4 | YCF4 | 3.3 |
| TRINITY_DN23616_c0_g1_i2 | YCF4 | 2.1 | |
| TRINITY_DN22135_c0_g2_i3 | Ycf3 interacting Protein | 2.9 | |
| TRINITY_DN27520_c0_g2_i3 | KEA1 | 2.7 | |
| TRINITY_DN24215_c0_g1_i3 | UPF0187 protein | 2.7 | |
| TRINITY_DN25274_c0_g1_i1 | TAB2 homolog | 3.2 | |
| TRINITY_DN25675_c1_g3_i1 | Serine/threonine-protein kinase STN7 | 2.7 | |
| TRINITY_DN25616_c0_g2_i1 | PPH1 2C 57 | 3.1 | |
| TRINITY_DN28540_c1_g8_i2 | PGR5 1A | 3.5 | |
| TRINITY_DN28540_c1_g2_i2 | PGR5 1A | 3.1 | |
| TRINITY_DN27605_c0_g1_i2 | PGR5 1A | 2.9 | |
| TRINITY_DN26853_c0_g1_i1 | PGR5 1B | 3.3 | |
| TRINITY_DN20751_c0_g2_i1 | PGR5 | 3.3 |