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. Author manuscript; available in PMC: 2019 Dec 1.
Published in final edited form as: Aquat Toxicol. 2018 Sep 29;205:25–35. doi: 10.1016/j.aquatox.2018.09.014

Table 3:

Evaluation of nucleotide and amino acid sequence identity of Atlantic sturgeon and shortnose sturgeon AHR1 to that of four other fishes (white sturgeon, lake sturgeon, Atlantic killifish, and zebrafish) and two avian species (quail and albatross). Genbank Accession No. KJ420394, KM236089, NM_001323184 (quail), AB106109 (albatross), AF024591 (killifish), and AF258854 (zebrafish, AHR1B) respectively. The LALIGN program in http://www.ebi.ac.uk/Tools/psa/lalign/nucleotide.html was used for this analysis.

Nucleotide Identity (%)
Shortnose
sturgeon
White
sturgeon
Lake
sturgeon
Quail Albatross Atlantic
killifish
Zebrafish
Atlantic
sturgeon
97.5 96.6 91.9 64.3 64.9 58.6 59.2
Shortnose
sturgeon
98.2 93.5 64.6 65.0 58.9 59.7
White sturgeon 93.3 64.4 64.7 59.1 59.6
Lake sturgeon 63.1 63.0 60.7 59.8
Quail 91.1 59.7 58.2
Albatross 59.1 58.5
Atlantic killifish 55.6
Amino Acid Identity (%)
Shortnose
sturgeon
White
sturgeon
Lake
sturgeon
Quail Albatross Atlantic
killifish
Zebrafish
Atlantic
sturgeon
98.2 98.2 93.3 78.9 79.0 73.6 71.1
Shortnose
sturgeon
99.3 94.4 78.4 78.9 71.9 70.9
White sturgeon 94.5 79.0 79.3 74.5 70.9
Lake sturgeon 76.2 76.4 68.5 71.0
Quail 97.4 77.9 73.2
Albatross 78.1 67.3
Atlantic killifish 74.0