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. 2018 Nov 20;86(12):e00709-18. doi: 10.1128/IAI.00709-18

TABLE 10.

Possible effects of SNP rs3816527 on alternative splicing of PTX3 pre-mRNAa

3′ reference motif Reference score Mutated motif Mutation score Variation (%)
gtgtgtatcccgtactctagCCA 4.47 gtgtgtatcccgtactctagCCA 4.47 +0
CGCCGTGCGACTGCGGTCAGGAG 1.69 cgccgtgcgcctgcggtcagGAG 4.1 +342.6
a

The Human Splicing Finder system allowed the identification and prediction of a new possible cryptic site on PTX3 pre-mRNA with a high score variation. The C/A change (boldface) generates a cryptic site (italics). As a result, 23 nucleotides of exon 2 (uppercase) become part of the intron sequence (lowercase).