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Performance comparison of SeqVItA with BCFtools, VarScan2 and GATK on simulated data at three sequencing depths 20 ×, 40 ×, and 60 × in detecting homozygous (Homo) and heterozygous (Het) (A) SNVs, (B,C) insertions (Ins), and (D–E) deletions (Del). Read length = 100 bp, and base quality threshold ≥ 15.
