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JAMA Network logoLink to JAMA Network
. 2018 Sep 26;75(11):1156–1172. doi: 10.1001/jamapsychiatry.2018.2165

Prediction Models of Functional Outcomes for Individuals in the Clinical High-Risk State for Psychosis or With Recent-Onset Depression

A Multimodal, Multisite Machine Learning Analysis

Nikolaos Koutsouleris 1,, Lana Kambeitz-Ilankovic 1, Stephan Ruhrmann 2, Marlene Rosen 2, Anne Ruef 1, Dominic B Dwyer 1, Marco Paolini 1, Katharine Chisholm 4, Joseph Kambeitz 1, Theresa Haidl 2, André Schmidt 5, John Gillam 6,7, Frauke Schultze-Lutter 8, Peter Falkai 1, Maximilian Reiser 9, Anita Riecher-Rössler 5, Rachel Upthegrove 3,4, Jarmo Hietala 10, Raimo K R Salokangas 10, Christos Pantelis 11,12, Eva Meisenzahl 8, Stephen J Wood 4,6,7, Dirk Beque 13, Paolo Brambilla 14, Stefan Borgwardt 5, for the PRONIA Consortium
PMCID: PMC6248111  PMID: 30267047

Key Points

Question

Can we develop accurate prediction models for future social and occupational disability in individuals in clinical high-risk states of psychosis or with recent-onset depression?

Findings

Machine-learning prediction models trained on functional, neuroimaging, and combined baseline data correctly determined social outcomes at 1 year in up to 83% of patients in clinical high-risk states and 70% of patients with recent-onset depression across geographically distinct populations but could not accurately determine role-functioning outcomes. Models outperformed human prognostication and provided a prognostic proxy for broader psychiatric morbidity in patients in clinical high-risk states for psychosis.

Meaning

If further validated, these predictive models could inform the personalized prevention of functional impairment in patients in clinical high-risk states and patients with recent-onset depression.


This cohort study assesses whether machine learning based on clinical and imaging data can determine predictors associated with social and role functioning in patients with recent-onset depression or in clinical high-risk states for psychosis.

Abstract

Importance

Social and occupational impairments contribute to the burden of psychosis and depression. There is a need for risk stratification tools to inform personalized functional-disability preventive strategies for individuals in at-risk and early phases of these illnesses.

Objective

To determine whether predictors associated with social and role functioning can be identified in patients in clinical high-risk (CHR) states for psychosis or with recent-onset depression (ROD) using clinical, imaging-based, and combined machine learning; assess the geographic, transdiagnostic, and prognostic generalizability of machine learning and compare it with human prognostication; and explore sequential prognosis encompassing clinical and combined machine learning.

Design, Setting, and Participants

This multisite naturalistic study followed up patients in CHR states, with ROD, and with recent-onset psychosis, and healthy control participants for 18 months in 7 academic early-recognition services in 5 European countries. Participants were recruited between February 2014 and May 2016, and data were analyzed from April 2017 to January 2018.

ain Outcomes and Measures

Performance and generalizability of prognostic models.

Results

A total of 116 individuals in CHR states (mean [SD] age, 24.0 [5.1] years; 58 [50.0%] female) and 120 patients with ROD (mean [SD] age, 26.1 [6.1] years; 65 [54.2%] female) were followed up for a mean (SD) of 329 (142) days. Machine learning predicted the 1-year social-functioning outcomes with a balanced accuracy of 76.9% of patients in CHR states and 66.2% of patients with ROD using clinical baseline data. Balanced accuracy in models using structural neuroimaging was 76.2% in patients in CHR states and 65.0% in patients with ROD, and in combined models, it was 82.7% for CHR states and 70.3% for ROD. Lower functioning before study entry was a transdiagnostic predictor. Medial prefrontal and temporo-parieto-occipital gray matter volume (GMV) reductions and cerebellar and dorsolateral prefrontal GMV increments had predictive value in the CHR group; reduced mediotemporal and increased prefrontal-perisylvian GMV had predictive value in patients with ROD. Poor prognoses were associated with increased risk of psychotic, depressive, and anxiety disorders at follow-up in patients in the CHR state but not ones with ROD. Machine learning outperformed expert prognostication. Adding neuroimaging machine learning to clinical machine learning provided a 1.9-fold increase of prognostic certainty in uncertain cases of patients in CHR states, and a 10.5-fold increase of prognostic certainty for patients with ROD.

Conclusions and Relevance

Precision medicine tools could augment effective therapeutic strategies aiming at the prevention of social functioning impairments in patients with CHR states or with ROD.

Introduction

Recent research has extended the scope of early recognition and prevention of psychosis beyond disease transition to poor outcomes more broadly.1,2,3,4,5 This is because the clinical high-risk (CHR) state for psychosis, present in 2% to 10% of youth,6 may be linked with nonpsychotic morbidity encompassing mood, anxiety, and substance use disorders.3 Moreover, the CHR state frequently entails persistent neurocognitive and functional deficits, which may cause the affected young persons to increasingly lag behind their peers in a critical phase of personal development.7,8,9 Prospective research has demonstrated that these deficits, in combination with clinical and sociodemographic risk factors, foreshadow poor clinical outcomes.9,10,11,12,13 Similarly, adolescents and young adults who experience a first major affective episode are not only at risk for relapse but frequently have persistent functional deficits, depressive symptoms, and reduced quality of life, as is often seen in patients in the CHR state.14 These shared impairments6,15 may point to a common neurobiological surrogate predating the disabling outcomes of these conditions. Such a marker of brain pathology could accurately estimate the risk for functional deficits, thus informing risk-adapted preventive interventions in these vulnerable persons.

Previous research suggested that psychosis can be predicted in individual patients in CHR states who are recruited in research contexts12,16,17,18,19,20 and secondary health care settings21 through the use of clinical, neurocognitive, neurophysiological, and magnetic resonance imaging (MRI) data. This precision medicine approach has been further strengthened by machine-learning studies showing that clinical baseline data may be associated with predictors of functional and treatment outcomes in first-episode psychosis and depression across multiple sites.22,23,24 Proof-of-concept studies have also suggested that global functioning of the CHR state can be individually approximated by MRI-based models.25,26 However, the predictability of functional outcomes should be separately assessed for the social and role functioning domains because these may be differentially linked to symptoms, neurocognitive deficits, and adverse outcomes; for instance, disorganization and processing speed may be associated with predictors of social disability (which in turn is associated with transition to psychosis), while motor disturbances and verbal fluency may be linked with occupational disability.7,12,27,28 Furthermore, predictability should be compared across partly overlapping clinical syndromes, such as the CHR state and major depressive disorder, and benchmarked in large, geographically diverse cohorts of vulnerable persons.29

Although it has been conceptually suggested, the question of whether behavioral and MRI-based data could be efficiently combined within sequential prognostic algorithms to optimize predictive power has yet to be empirically tested.30 The clinical implementation of such algorithms does not only depend on the evidence for their generalizability, but also on the accuracy margin between models and the practices of health care professionals.31 Only if a conservative estimate of this margin indicates that clinical reasoning could be enhanced in terms of precision, time, and costs would computer-aided decision support in clinical settings be justified.31,32,33 Finally, validated predictors associated with specific outcomes could provide resource allocation tools for existing psychosocial interventions,34,35,36 and foster biobehavioral mechanistic research leading to new personalized and preventive treatments for social and occupational disability.37

To develop such prognostic signatures, the Personalized Prognostic Tools for Early Psychosis Management (PRONIA; https://www.pronia.eu/) study is collecting multimodal data from healthy control participants and young patients who meet criteria for the CHR state, recent-onset psychosis, or recent-onset depression (ROD). In this first study, we test the geographic generalizability of functional, neuroanatomical, and combined machine-learning models, tasked with predicting the 1-year social and role functioning of patients in the CHR state and patients with ROD recruited in 5 European countries. We estimate the models’ transdiagnostic transferability and their associations with prognostic generalizability across diagnostic and psychometric outcome domains, compare them with the prognostic estimates provided by clinical raters, and explore sequential prognostic algorithms combing clinical and imaging-based models.

Methods

The study methods are detailed in the eMethods in the Supplement. We analyzed patients with CHR or ROD who were recruited using internationally established diagnostic criteria, and for whom baseline MRI and follow-up social and role functioning scores were available between the 3-month and 12-month points of the study (eFigure 1 in the Supplement). Additionally, we matched health control participants individually for site, age, and sex to the participants in the clinical groups (eTable 1 in the Supplement). Recruitment took place at 7 sites in 5 countries: the Departments of Psychiatry of the Ludwig-Maximilian-University in Munich, Bavaria, Germany; University of Cologne in Cologne, North Rhineland–Westphalia, Germany; University of Turku, Turku, Finland; University of Basel, Basel, Switzerland; University of Udine, Udine, Italy; the Institute of Mental Health at University of Birmingham, Birmingham, England; and 4 recruitment hospitals associated with the University of Milan, Milan, Italy (Niguarda, Policlinico, San Paolo, and Villa San Benedetto Menni in Albese con Cassano; eTable 2 in the Supplement). Participants were recruited between February 2014 and May 2016 and followed up using a standarized longitudinal study protocol (eFigure 1 in the Supplement). Based on this protocol, they were examined using a comprehensive clinical, neuropsychological, and neuroimaging protocol (eTables 3 and 4 in the Supplement). Inclusion and exclusion criteria are detailed in the eMethods and eTable 5 of the Supplement. A Consolidated Standards of Reporting Trials flowchart of the patients studied here is provided in eFigure 2 of the Supplement.

All adult participants provided their written informed consent prior to study inclusion. Minor participants (defined at all sites as those younger than 18 years) provided written informed assent and their guardians, written informed consent. The study was registered at the German Clinical Trials Register (DRKS00005042) and approved by the local research ethics committees in each location.

The Global Functioning: Social and Global Functioning: Role scales7,10 were used to define good vs impaired social and role functioning at a threshold of more than 7 points (good) vs 7 or fewer points (impaired), using the participants’ latest examination within the 3-month to 12-month follow-up period. This cutoff demarcates a mild but already persistent or frequent social-functioning or role-functioning impairment. Regular interrater reliability tests were performed to calibrate the Global Functioning scales across study sites (eTable 6 in the Supplement). The distributions of Global Functioning Social and Role scores at baseline and follow-up are shown in eFigure 3 in the Supplement, and their changes over time were analyzed in eFigure 4 in the Supplement.

Our machine-learning software, NeuroMiner (version 0.998; https://www.pronia.eu/neurominer/), was used to train 3 types of models to predict these outcomes (eFigure 2 in the Supplement). The first used the participants’ 8 baseline global functioning social and role scores (including each patient’s highest lifetime score, highest or lowest score in the past year, and current social and role Global Functioning Scale scores). The second model analyzed gray matter volume (GMV) images. The third model combined the former 2 models’ outputs into a single result.38 The models were geographically validated using nested leave-site-out cross-validation. Further validation analyses assessed the influence of image quality (eFigure 5 in the Supplement), follow-up interval variations (eFigure 6 in the Supplement), site-associated variations (eFigure 7 and eTable 7 in the Supplement), and baseline social functioning variations (eTable 8 in the Supplement). Voxel-based morphometric (VBM) analyses compared the patterns of association of predictors in patient groups with the neuroanatomical variation of the samples from the matched healthy control participants (eFigures 8 and 9 in the Supplement). Details of structural MRI (sMRI) sequence parameters are in eTable 4 in the Supplement.

The reliability of MRI-based and clinical predictions feeding into combined models was measured via a cross-validation ratio profile (CVR = mean(w)/standard error(w), where w is the normalized weight vector of the support-vector machine models generated in the study’s nested leave-site-out cross-validation setup. Normalization was performed using the Euclidean norm of w, defined as s=w/||w||2.39

Models were compared with each other and with expert raters’ prognostic performance (eTable 9 in the Supplement). The number of raters is indeterminate, because the health care professionals who rated each patient were not recorded in the central database for security reasons.

Furthermore, we tested model transferability between the 2 clinical groups and assessed their prognostic generalizability to outcomes beyond social functioning, including (1) transition to psychosis, (2) mood, anxiety, and substance-associated DSM-IV-TR diagnoses at the follow-up examination 9 months after study entry (eTable 10 in the Supplement), and (3) multivariate patterns40 of clinical and functional changes between baseline and follow-up (eFigure 10 in the Supplement). We also explored whether the outcome probability estimates provided by the sMRI-based social functioning predictor could be used for the prediction of the ordinal GF scores (eMethods and eFigure 11 in the Supplement). Finally, we assessed prognostic algorithms sequentially combining clinical and sMRI-based models (eFigures 12 and 13 in the Supplement).

Permutation testing was used to assess the models’ statistical significance, which was defined as a P value less than .05 (further details in the eMethods in the Supplement). The false-detection rate was used to correct the P values of multiple comparisons with respect to descriptive statistics, leave-site-out analyses, and assessments of transdiagnostic generalizability. Descriptive univariate analyses were carried out using SPSS version 23 (IBM). Data analysis was completed from April 2017 to January 2018.

Results

Group-Level Sociodemographic and Clinical Differences at Baseline

We recruited a total of 116 patients in the CHR state and 120 patients with ROD. In addition, we recruited 176 healthy control participants who were matched to the respective patient groups by age, site, and sex (eTable 1 in the Supplement).

The sociodemographic characteristics of patients in CHR states who had impaired social functioning at follow-up did not differ significantly from those of patients with unimpaired outcomes. However, patients in CHR states with impaired role functioning outcomes showed more eductional problems in terms of educational years repeated (patients with impaired outcomes: mean [SD], 0.5 [1.0] years; patients with unimpaired outcomes: mean [SD], 0.1 [0.3] years; P = .01; Table 1). Compared with patients with ROD who were unimpaired at follow-up, patients with ROD who had impaired outcomes had a younger mean (SD) age (patients with impaired social-functioning outcomes: 24.6 [5.6] years; patients with unimpaired social-functioning outcomes: 28.0 [6.2] years; P = .01; patients with impaired role-functioning outcomes: 24.5 [5.5] years; patients with unimpaired role-functioning outcomes: 28 [6.2] years; P = .01) and fewer years of education (patients with impaired social-functioning outcomes: 14.2 [2.9] years; patients with unimpaired social-functioning outcomes: 16.1 [3.0] years; P = .01; patients with impaired role-functioning outcomes: 14.3 [3.0] years; patients with unimpaired role-functioning outcomes: 15.8 [3.1] years; P = .03). Impaired social functioning at follow-up was associated with a lower likelihood of having a partner at baseline in patients with ROD (impaired social functioning: 29 of 65 [44.6%]; unimpaired social-functioning: 40 of 55 [72.7%]; P = .01).

Table 1. Study-Associated, Sociodemographic, Physical, Clinical, and Functional Differences at Baseline in Individuals in Clinical High-Risk States and Individuals With Recent-Onset Depression With Impaired vs Unimpaired Social-Functioning and Role-Functioning Outcomes at Follow-up.

Characteristic Follow-up
Clinical High-Risk Group Recent-Onset Depression Group
Impaired Unimpaired t/z2 P Value Impaired Unimpaired t/z2 P Value
Social Functioning
Sample sizes and study variables
Total No. 66 50 χ27 = 16.4 65 55
Participants per site, No. (%) .03 χ26 = 3.10 .95
Munich 22 (33) 11 (22) 22 (34) 17 (31)
Milan 5 (8) 1 (2) 2 (3.0) 2 (4)
Basel 4 (6) 11 (22) 6 (9) 8 (15)
Cologne 10 (15) 9 (18) 12 (18) 9 (16)
Birmingham 3 (5) 9 (18) 5 (8) 8 (15)
Turku 14 (21) 5 (10) 8 (12) 4 (7)
Udine 8 (12) 4 (8) 10 (15) 7 (13)
Interval between MRI and clinical examination, mean (SD), d 343.7
(146.7)
333.3
(158.6)
t114 = 0.37 .80 312.6
(141.0)
327.3
(125.5)
t118 = 0.60 .69
Participants examined postenrollment, No. per month χ23 = 4.84 .29 χ23 = 1.71 >.99
3 2 1 7 3
6 2 7 4 3
9 43 29 44 37
12 19 13 10 12
Sociodemographic data
Age, mean (SD), y 23.6 (4.7) 24.5 (5.5) t114 = −1.00 .46 24.6 (5.6) 28.0 (6.2) t118 = −3.10 .01
Male, No. (%) 34 (51.5) 24 (48.0) χ21 = 0.14 .91 30 (46.2) 25 (45.5) χ21 = 0.01 >.99
Edinburgh Handedness Score, mean (SD) 58.1 (61.7) 70.7 (54.6) t105 = −1.10 .41 77.2 (42.9) 78 (39.2) t110 = −0.11 >.99
Education, mean (SD), y 13.3 (2.5) 14.3 (3.5) t114 = −1.71 .17 14.2 (2.9) 16.1 (3.0) t117 = −3.49 .01
Educational years repeated, mean (SD), y 0.5 (0.9) 0.2 (0.5) t114 = 2.23 .08 0.2 (0.6) 0.5 (1.2) t115 = −1.18 .34
Having a partnership most of the time in the year before study inclusion, No. (%) 30 (45.5) 29 (58.0) χ21 = 1.79 .32 29 (44.6) 40 (72.7) χ21 = 9.63 .01
Population density in living area, mean (SD), habitants/km2 2876.5
(2314.2)
3229.1
(2470.9)
t114 = −0.79 .57 2773.0
(2401.3)
3375.4
(2212.4)
t118 = −1.42 .25
Clinical high-risk state inclusion criteria
Schizotypal personality disorder present, No. (%) 6 (9.1) 0 χ21 = 4.79 .09 0 0 NA NA
First-degree relatives with psychosis, No. (%) 5 (7.6) 10 (20.0) χ21 = 3.90 .13 2 (3.1) 1 (1.8) χ21 = 0.19 <.99
30% Loss of global functioning compared with highest levels in the year before study inclusion, No. (%) 34 (51.5) 18 (36.0) χ21 = 2.77 .23 13 (20.0) 7 (12.7) χ21 = 1.14 .45
Genetic Risk Disability Schizotypal Personality Disorder Criterion criteria met, No. (%) 7 (10.6) 8 (16.0) χ21 = 0.74 .56 NA NA NA NA
Cognitive Disturbances criteria met, No. (%) 34 (51.5) 31 (62.0) χ21 = 1.27 .49 NA NA NA NA
Attenuated Psychotic Symptoms criteria met, No. (%) 42 (63.6) 30 (60.0) χ21 = 0.16 .79 NA NA NA NA
Brief Limited Intermittent Psychotic Symptoms criteria met, No. (%) 2 (3.0) 2 (4.0) χ21 = 0.08 >.99 NA NA NA NA
Global Assessment of Functioning score at baseline, mean (SD)
Disability, highest lifetime score 78.1 (8.5) 82.1 (6.9) t114 = −2.71 .03 78.7 (8.7) 83.3 (7.2) t118 = −3.17 .01
Symptoms, highest lifetime score 78.8 (8.5) 80.6 (8.4) t114 = −1.14 .39 81 (7.2) 83.5 (7.1) t118 = −1.87 .14
Disability, score in past year 64.8 (13.1) 72.1 (10.4) t114 = −3.25 .01 68.2 (14.5) 75.2 (11.6) t118 = −2.87 .02
Symptoms, score in past year 64.3 (12.1) 69.6 (10.4) t114 = −2.49 .04 70.7 (12.7) 73.5 (11.2) t118 = −1.29 .30
Disability, score in past month 52.5 (11.7) 60.2 (14.9) t114 = −2.99 .02 52.2 (13.4) 61.4 (14.6) t118 = −3.57 .01
Symptoms, score in past month 53.2 (11) 57.5 (10.5) t114 = −2.12 .09 53.1 (11.5) 58.2 (12.5) t118 = −2.32 .06
Global Functioning: Social scale, mean (SD) score
Highest lifetime score 7.5 (0.8) 8.3 (0.6) z = −5.24 <.001 7.8 (0.9) 8.4 (0.8) z = −3.69 <.001
Highest score in past year 6.7 (1.4) 7.8 (0.7) z = −5.55 <.001 6.9 (1.4) 7.7 (0.8) z = −3.69 <.001
Baseline score 6 (1.3) 7.1 (1.1) z = −4.51 <.001 5.9 (1.5) 6.9 (1.0) z = −4.15 <.001
Global Functioning: Role scale, mean (SD) score
Highest lifetime score 7.8 (0.9) 8.2 (0.8) z = −2.64 .03 8 (0.8) 8.6 (0.8) z = −3.47 .01
Highest score in past year 6.8 (1.3) 7.6 (0.9) z = −3.40 .01 7.3 (1.1) 7.9 (1.1) z = −3.30 .01
Baseline 5.7 (1.4) 6.7 (1.2) z = −3.83 <.001 5.9 (1.7) 6.8 (1.4) z = −3.09 .01
Standardized Interview for Prodromal Symptoms score at baseline, mean (SD) scores
Unusual thought content or delusional ideas 2.36 (1.65) 2.56 (1.61) z = −0.64 .63 0.97 (1.06) 0.93 (0.96) z = 0.23 .95
Suspiciousness or Persecutory ideas 1.91 (1.91) 1.86 (1.87) z = 0.14 .93 0.17 (0.45) 0.31 (0.74) z = −1.22 .33
Grandiosity 0.38 (0.97) 0.28 (0.78) z = 0.59 .65 0.06 (0.30) 0.00 (0.00) z = 1.66 .19
Perceptual abnormalities 1.85 (1.92) 2.06 (1.45) z = −0.68 .63 0.68 (0.94) 0.80 (1.21) z = −0.63 .67
Disorganized communication 0.95 (1.47) 0.76 (1.14) z = 0.78 .57 0.25 (0.64) 0.09 (0.35) z = 1.69 .18
Social anhedonia 2.36 (1.75) 1.18 (1.57) z = 3.76 <.001 2.18 (1.90) 1.40 (1.61) z = 2.42 .05
Avolition 2.55 (1.64) 2.00 (1.59) z = 1.80 .15 2.60 (1.67) 2.22 (1.61) z = 1.28 .30
Expression of emotion 1.30 (1.59) 0.62 (1.19) z = 2.65 .03 1.12 (1.42) 0.55 (1.00) z = 2.61 .03
Experience of emotions and self 1.50 (1.55) 1.22 (1.61) z = 0.95 .49 1.26 (1.42) 1.24 (1.60) z = 0.09 >.99
Ideational richness 0.76 (1.50) 0.14 (0.50) z = 3.15 .01 0.35 (0.99) 0.05 (0.30) z = 2.36 .06
Occupational functioning 2.97 (1.91) 1.90 (1.73) z = 3.12 .01 2.62 (1.74) 2.07 (1.73) z = 1.71 .18
Beck Depression Inventory sum score 25.3 (11.1) 22.4 (11.0) t106 = 1.32 .32 23.8 (12.5) 23.9 (12.6) t111 = −0.50 >.99
Positive and Negative Syndrome Scale, mean (SD) scores
Total 52.9 (15.2) 46.7 (10.1) t112 = 2.62 .03 49.5 (10.3) 44.0 (9.6) t117 = 3.00 .01
Positive sum 10.1 (3.0) 10.1 (3.1) t113 = −0.10 .94 7.6 (1.1) 7.6 (1.1) t117 = −0.11 >.99
Negative sum 14.6 (6.6) 9.8 (3.6) t113 = 4.93 <.001 13.6 (5.2) 11.1 (4.0) t117 = 2.94 .02
General sum 28.3 (7.7) 26.8 (5.9) t112 = 1.20 .36 28.3 (6.4) 25.4 (6.2) t117 = 2.58 .04
Role Functioning
Sample sizes and study variables
Total No. 69 47 64 56
Participants per site, No. (%) χ27 = 12.4 .12 χ26 = 1.8 >.99
Munich 21 (30) 12 (26) 22 (34) 17 (30)
Milan 5 (7) 1 (2) 3 (5) 1 (2)
Basel 5 (7) 10 (21) 7 (11) 7 (13)
Cologne 12 (17) 7 (15) 10 (16) 11 (20)
Birmingham 4 (6) 8 (17) 6 (9) 7 (13)
Turku 15 (22) 4 (9) 6 (9) 6 (11)
Udine 7 (10) 5 (11) 10 (16) 7 (13)
Interval between MRI and clinical examination, mean (SD), d 338.3
(158.2)
340.5
(142.3)
t114 = 0.08 .95 301.1
(135.8)
340.1
(129.5)
t118 = −1.60 .19
Participants examined postenrollment, No. per month χ23 = 2.89 .59 χ23 = 3.40 .46
3 3 0 7 3
6 4 5 5 2
9 43 29 43 38
12 19 13 9 13
Sociodemographic data
Age, mean (SD), y 23.7 (4.9) 24.4 (5.3) t114 = −0.68 .61 24.5 (5.5) 28 (6.2) t118 = −3.30 .01
Male, No. (%) 36 (52.2) 22 (46.8) χ21 = 0.32 .79 31 (48.4) 24 (42.9) χ21 = 0.38 .72
Edinburgh Handedness Score, mean (SD) 55.9 (66.3) 75.3 (43.5) t105 = −1.83 .15 78.2 (37.7) 76.9 (44.6) t110 = 0.18 .98
Education, mean (SD), y 13.4 (2.5) 14.1 (3.5) t114 = −1.22 .36 14.3 (3.0) 15.8 (3.1) t117 = −2.62 .03
Educational years repeated, mean (SD), y 0.5 (1.0)a 0.1 (0.3)a t114 = 3.01 .01 0.3 (0.6) 0.4 (1.2) t115 = −1.07 .40
Having a partnership most of the time in the year before study inclusion, No. (%) 33 (47.8) 26 (55.3) χ21 = 0.63 .59 32 (50.0) 37 (66.1) χ21 = 3.16 .18
Population density in living area, mean (SD), habitants/km2 2916.2
(2265.8)
3193.3
(2552)
t114 = −0.61 .64 3032.7
(2422.3)
3067.9
(2234)
t118 = −0.08 >.99
Clinical high-risk state inclusion criteria
Schizotypal personality disorder present, No. (%) 5 (7.2) 1 (2.1) χ21 = 1.49 .54 0 0 NA NA
First-degree relatives with psychosis, No. (%) 4 (5.8) 11 (23.4) χ21 = 7.7 .03 2 (3.1) 1 (1.8) χ21 = 0.22 >.99
30% Loss of global functioning compared with highest levels in the year before study inclusion, No. (%) 36 (52.2) 16 (34.0) χ21 = 3.72 .13 14 (21.9) 6 (10.7) χ21 = 2.68 .23
Genetic Risk Disability Schizotypal Personality Disorder Criterion criteria met, No. (%) 6 (8.7) 9 (19.1) χ21 = 2.71 .27 NA NA NA NA
Cognitive Disturbances criteria met, No. (%) 38(55.1) 27 (57.4) χ21 = 0.06 .91 NA NA NA NA
Attenuated Psychotic Symptoms criteria met, No. (%) 47 (49.3) 25 (53.2/ ) χ21 = 2.65 .22 NA NA NA NA
Brief Limited Intermittent Psychotic Symptoms criteria met, No. (%) 1 (1.4) 3 (6.4) χ21 = 2.04 .45 NA NA NA NA
Global Assessment of Functioning score at baseline, mean (SD)
Disability, highest lifetime score 78.7 (9) 81.5 (6.2) t114 = −1.98 .12 79.2 (9) 82.7 (7) t118 = −2.36 .06
Symptoms, highest lifetime score 78.7 (8.7) 80.8 (8.1) t114 = −1.30 .32 81.2 (7.2) 83.3 (7.2) t118 = −1.55 .20
Disability, score in past year 66 (13.5) 70.8 (10.5) t114 = −2.02 .1 67.9 (14.3) 75.3 (11.7) t118 = −3.07 .01
Symptoms, score in past year 64.6 (12.5) 69.6 (9.7) t114 = −2.30 .07 70.3 (12.5) 73.9 (11.3) t118 = −1.63 .19
Disability, score in past month 52.6 (12.1) 60.5 (14.5) t114 = −3.19 .01 51.9 (13.0) 61.6 (14.8) t118 = −3.85 <.001
Symptoms, score in past month 53.4 (10.8) 57.5 (10.7) t114 = −1.98 .12 53.3 (11.5) 58 (12.5) t118 = −2.14 .08
Global Functioning: Social scale, mean (SD) score
Highest lifetime score 7.7 (0.9) 8.2 (0.7) z = −3.14 .01 7.9 (0.9) 8.3 (0.9) z = −2.80 .02
Highest score in past year 6.9 (1.4) 7.6 (0.8) z = −2.87 .02 7.0 (1.4) 7.6 (1.0) z = −2.15 .08
Baseline score 6.2 (1.4) 6.9 (1.1) z = −2.54 .03 6.0 (1.5) 6.8 (1.3) z = −3.21 .01
Global Functioning: Role scale, mean (SD) score
Highest lifetime score 7.8 (0.9) 8.3 (0.7) z = −3.80 <.001 8.1 (0.8) 8.5 (0.8) z = −2.78 .01
Highest score in past year 6.8 (1.2) 7.7 (0.9) z = −4.29 <.001 7.3 (1.1) 7.9 (1.2) z = −3.10 .01
Baseline 5.6 (1.2) 6.9 (1.3) z = −4.93 <.001 5.9 (1.7) 6.8 (1.5) z = −2.60 .03
Standardized Interview for Prodromal Symptoms score at baseline, mean (SD) scores
Unusual thought content or delusional ideas 2.39 (1.67) 2.53 (1.57) z = −0.41 .75 1.05 (1.03) 0.84 (0.99) z = 1.12 .37
Suspiciousness or Persecutory ideas 1.87 (1.84) 1.91 (1.98) z = −0.13 .93 0.23 (0.66) 0.23 (0.54) z = 0.02 >.99
Grandiosity 0.35 (0.94) 0.32 (0.84) z = 0.17 .92 0.03 (0.18) 0.04 (0.27) z = −0.11 >.99
Perceptual abnormalities 1.97 (1.85) 1.89 (1.56) z = 0.24 .89 0.77 (0.96) 0.70 (1.19) z = 0.35 .87
Disorganized communication 1.04 (1.46) 0.62 (1.09) z = 1.80 .15 0.27 (0.65) 0.07 (0.32) z = 2.12 .09
Social anhedonia 2.09 (1.73) 1.51 (1.79) z = 1.74 .17 2.17 (1.86) 1.43 (1.67) z = 2.29 .06
Avolition 2.58 (1.56) 1.91 (1.68) z = 2.19 .09 2.64 (1.53) 2.18 (1.74) z = 1.55 .20
Expression of emotion 1.17 (1.59) 0.77 (1.24) z = 1.55 .22 1.11 (1.43) 0.57 (1.01) z = 2.41 .05
Experience of emotions and self 1.49 (1.56) 1.21 (1.6) z = 0.94 .49 1.34 (1.42) 1.14 (1.59) z = 0.73 .61
Ideational richness 0.72 (1.46) 0.15 (0.51) z = 3.01 .01 0.31 (0.94) 0.11 (0.45) z = 1.55 .20
Occupational functioning 3.25 (1.70) 1.43 (1.65) z = 5.73 <.001 2.7 (1.71) 1.98 (1.73) z = 2.29 .06
Beck Depression Inventory sum score 25.6 (11.2) 21.9 (10.7) z = 1.71 .17 23 (11.9) 24.7 (13.3) z = −0.70 .63
Positive and Negative Syndrome Scale, mean (SD) scores
Total 52.9 (14.9) 46.4 (10.1) t112 = 2.79 .03 48.7 (10.2) 44.9 (10.2) t117 = 2.04 .10
Positive sum 10.3 (3.0) 9.9 (3.0) t113 = 0.70 .61 7.6 (1.2) 7.5 (1.0) t117 = 0.49 .76
Negative sum 14.1 (6.8) 10.1 (3.6) t113 = 4.12 <.001 13.2 (5.0) 11.4 (4.6) t117 = 1.98 .11
General sum 28.5 (7.6) 26.4 (6.1) t112 = 1.55 .22 27.9 (6.5) 25.9 (6.3) t117 = 1.67 .18

Abbreviations: MRI, magnetic resonance imaging; NA, not applicable.

Across study groups, impaired social-functioning outcomes were associated with lower Global Assessment of Functioning disability scores in the month before study inclusion (patients in CHR states: mean [SD] Global Assessment of Functioning disability scores, impaired at follow-up: 52.5 [11.7]; unimpaired at follow-up: 60.2 [14.9]; P = .02; patients with ROD: mean [SD] scores, impaired at follow-up: 52.5 [13.4]; unimpaired at follow-up: 61.4 [14.6]; P = .01). Furthermore, impaired social functioning at follow-up was associated with reduced social functioning at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 6.0 [1.3]; unimpaired at follow-up: 7.1 [1.1]; P < .001; patients with ROD: mean [SD] scores, impaired at follow-up: 5.9 [1.5]; unimpaired at follow-up: 6.9 [1.0]; P < .001), and reduced global role functioning at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 5.7 [1.4]; unimpaired at follow-up: 6.7 [1.2]; P < .001; patients with ROD: mean [SD] scores, impaired at follow-up: 5.9 [1.7]; unimpaired at follow-up: 6.8 [1.4]; P = .01).

These differences extended to the social functioning in the past year (patients in CHR states: mean [SD] scores, impaired at follow-up: 6.7 [1.4]; unimpaired at follow-up: 7.8 [0.7]; P < .001; patients with ROD: impaired at follow-up: 6.9 [1.4]; unimpaired at follow-up: 7.7 [0.8]; P < .001) and lifetime social functioning (patients in CHR states: mean [SD] scores, impaired at follow-up: 7.5 [0.8]; unimpaired at follow-up: 8.3 [0.6]; P < .001; patients with ROD: impaired at follow-up: 7.8 [0.9]; unimpaired at follow-up: 8.4 [0.8]; P < .001).

At the level of psychopathology, we observed transdiagnostic baseline differences between groups with impaired and unimpaired outcomes in social functioning in the attenuated negative symptoms domain, particularly an item in the Standardized Interview for Prodromal Symptoms (SIPS) scale specific to expression of emotions (patients in CHR states: mean [SD] scores, impaired at follow-up: 1.3 [1.6]; unimpaired at follow-up: 0.6 [1.2]; P = .03; patients with ROD: mean [SD] scores, impaired at follow-up: 1.1 [1.4]; unimpaired at follow-up: 0.6 [1.0]; P = .03). Further differences were measured in the Positive and Negative Syndrome Scale (PANSS) total scores at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 52.9 [15.2]; unimpaired at follow-up: 46.7 [10.1]; P = .03; patients with ROD: impaired at follow-up: 49.5 [10.3]; unimpaired at follow-up: 44.0 [9.6]; P = .01), and PANSS negative symptoms scores at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 14.6 [6.6]; unimpaired at follow-up: 9.8 [3.6]; P < .001; patients with ROD: impaired at follow-up: 13.6 [5.2]; unimpaired at follow-up: 11.1 [4.0]; P = .02).

Similar but less pronounced effects were observed in the role functioning outcome analyses of patients who were impaired and unimpaired, with the patients in CHR states who were impaired at follow-up being more affected in the social functioning at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 6.2 [1.4]; unimpaired at follow-up: 6.9 [1.1]; P = .03; patients with ROD: mean [SD] scores, impaired at follow-up: 6.0 [1.5]; unimpaired at follow-up: 6.8 [1.3]; P = .01), role functioning at baseline (patients in CHR states: mean [SD] scores, impaired at follow-up: 5.6 [1.2]; unimpaired at follow-up: 6.9 [1.3]; P < .001; patients with ROD: mean [SD] scores, impaired at follow-up: 5.9 [1.7]; unimpaired at follow-up: 6.8 [1.5]; P = .03). Significantly more severe baseline negative and PANSS total symptoms were found in the patients in CHR states who showed role functioning impairments at follow-up compared with those who were unimpaired (SIPS assessment of ideational richness: mean [SD] scores, impaired at follow-up: 0.7 [1.5]; unimpaired at follow-up: 0.2 [0.5]; P = .01; SIPS assessment of occupational functioning: impaired at follow-up: 3.3 [1.7]; unimpaired at follow-up: 1.4 [1.7]; P < .001; PANSS total score: impaired at follow-up: 52.9 [14.9]; unimpaired at follow-up: 46.4 [10.1]; P = .03; PANSS negative score: impaired at follow-up: 14.1 [6.8]; unimpaired at follow-up: 10.1 [3.6]; P < 001).

Current mood, anxiety, and substance use diagnoses were prevalent at baseline in the CHR group (33 of 51 patients [64.7%]) and ROD group (42 of 49 [85.7%]) but did not differ between outcome-defined samples (eTable 11 in the Supplement). During the follow-up period, symptomatic diagnoses declined, but less so in the groups who were impaired at follow-up: at least 1 DSM-IV diagnosis was present in 27 of 62 patients in CHR states who were impaired at follow-up (44%) and in 25 of 52 patients with ROD who were impaired at follow-up (48%), compared with 4 of 39 patients in CHR states who were unimpaired at follow-up (10%) and 12 of 48 patients with ROD who were unimpaired at follow-up (25%) (eTable 11 in the Supplement). These effects were driven by current depression and were independent of transition to psychosis (which occurred in 8 patients in CHR states and 2 patients with ROD; eTable 12 in the Supplement). Finally, we observed a significant interaction between study sites and social-functioning outcomes in the patients in CHR states (with the sample size per site of patients in CHR states who were impaired at follow-up varying from 22 of 33 [66%] in Munich to 5 of 6 [83%] in Milan, 4 of 15 [27%] in Basel, 10 of 19 [53%] in Cologne, 3 of 12 [25%] in Birmingham, 14 of 19 [74%] in Turku, and 8 of 12 [67%] in Udine, and the sample size per site of patients in CHR states who were unimpaired at follow-up ranging from 11 [33%] in Munich to 1 [17%] in Milan, 11 [73%] in Basel, 9 [47%] in Cologne, 9 [75%] in Birmingham, 5 [26%] in Turku, and 4 [33%] in Udine; P = .03 for groupwise comparison, Table 1). This interaction motivated additional MRI-based validation analyses, as described in the eMethods, eFigure 7, and eTable 7 in the Supplement.

Machine-Learning Analyses

The models evaluating the patients’ social and role functioning at and before study inclusion estimated the social-functioning outcomes of patients in CHR states with a significant leave-site-out balanced accuracy of 76.9% (sensitivity: 69.7%; specificity: 84.0%; P = .002 after false-detection rate adjustment; Table 2). Balanced accuracy of the group with ROD was 66.1%, with a sensitivity of 63.1% and specificity of 69.1% (P = .049; Table 2).

Table 2. Leave-Site-Out Classification Performance of Clinical, Imaging-Based, and Combined Machine-Learning Predictors of Global Functioning Social Scales or Global Functioning Role Scale Outcomes in Individuals in a Clinical High-Risk and Individuals With Recent-Onset Depressiona.

Leave-Site-Out Performance Sensitivity, % Specificity, % Balanced Accuracy, % Positive Predictive Value, % Negative Predictive Value, % Prognostic Summary Index Area Under Curve P Value for Model R2 P Value for Global Functioning
Social functioning
Group in clinical high-risk state
Clinical model 69.7 84.0 76.9 85.2 67.7 52.9 0.80 .002 0.344 <.001
sMRI model 80.3 72.0 76.2 79.1 73.5 52.6 0.78 .002 0.224 <.001
Combined model 83.3 82.0 82.7 85.9 78.9 64.8 0.86 <.001 0.402 <.001
Expert prognosis 51.5 92.0 71.8 89.5 59.0 48.4 0.72 NA NA NA
Group with recent-onset depression
Clinical model 63.1 69.1 66.1 70.7 61.3 32.0 0.72 .04 0.190 <.001
sMRI model 64.6 65.5 65.0 68.9 61.0 29.9 0.70 .04 0.079 .002
Combined model 76.9 63.6 70.3 71.4 70.0 41.4 0.77 .01 0.228 <.001
Expert rater prognosis 26.6 92.6 59.6 81.0 51.5 32.5 0.60 NA NA NA
Role functioning
Group in clinical high-risk state
Clinical model 60.9 74.5 67.7 77.8 56.5 34.2 0.70 .02 0.178 <.001
sMRI model 66.7 46.8 56.7 64.8 48.9 13.7 0.64 .12 0.138 <.001
Combined model 59.4 70.2 64.8 74.6 54.1 28.6 0.73 .07 0.267 <.001
Expert prognosis 49.3 91.5 70.4 89.5 55.1 44.6 0.70 NA NA NA
Group with recent-onset depression
Clinical model 59.4 55.4 57.4 60.3 54.4 14.7 0.65 .15 0.135 <.001
sMRI model 51.6 58.9 55.3 58.9 51.6 10.5 0.62 .15 0.027 .08
Combined model 60.9 64.3 62.6 66.1 59.0 25.1 0.67 .05 0.106 <.001
Expert rater prognosis 25.0 90.7 57.9 76.2 50.5 26.7 0.58 NA NA NA

Abbreviations: CHR, clinical high-risk (state); NA, not available; ROD, recent-onset depression; sMRI, structural magnetic resonance imaging.

a

Across all machine-learning models assessed, positive vs negative predictions defined impaired functional outcomes (defined by Global Functioning Scale scores ≤7) vs unimpaired functional outcomes (defined by Global Functioning Scale scores >7). Model significance was determined by 1000 random label permutations and corrected groupwise for multiple comparisons using the false-discovery rate.

b

Coefficients of determination between the outcome probability estimates and the patients’ Global Functioning Scale scores at follow-up were assessed for significance using 2-tailed P values, corrected by the false-discovery rate. Additionally, the expert rater prognoses regarding the study participants’ global functioning outcomes were compared with the Global Functioning Scale outcome labels, and respective prediction performances were calculated.

In the patients in CHR states, a model predicting role functioning scores was also significant and performed at balanced accuracy of 67.7% (sensitivity: 60.9%; specificity: 74.5%; P = .02). Clinical models outperformed the sMRI prediction model in their transdiagnostic transferability (Table 3). The features most useful for the model predicting social functioning outcome scores in the patients with ROD were Global Functioning Scale scores at baseline, reduced Global Functioning Scale scores in the year before study inclusion and reduced Global Functioning Scale scores over the lifetime (Figure 1). In the group in CHR states, the most useful features were a reduced social functioning score in the year before study inclusion and a reduced highest global functioning score over the lifetime (Figure 1).

Table 3. Transdiagnostic Generalizability of Clinical, Structional Magnetic Resonance Imaging–Based, and Combined Modelsa.

Social-Functioning Outcomes True Positive, No. True Negative, No. False Positive, No. False Negative, No. Sensitivity, % Specificity, % Balanced Accuracy, % Positive Predictive Value, % Negative Predictive Value, % Prognostic Summary Index Area Under Curve P Value for Model
Clinical models
Transdiagnostic performance 80 83 22 51 61.1 79.1 70.1 78.4 61.9 40.4 0.76 .03
ROD→CHR performance 42 43 7 24 63.6 86.0 74.8 85.7 64.2 49.9 0.82 .03
CHR→ROD performance 38 40 15 27 58.5 72.7 65.6 71.7 59.7 31.4 0.72 .16
sMRI models
Transdiagnostic performance 82 58 47 49 62.6 55.2 58.9 63.6 54.2 17.8 0.61 .10
ROD→CHR performance 46 25 25 20 69.7 50.0 59.9 64.8 55.6 20.3 0.60 .15
CHR→ROD performance 36 33 22 29 55.4 60.0 57.7 62.1 53.2 15.3 0.62 .16
Combined models
Transdiagnostic performance 89 69 36 42 67.9 65.7 66.8 71.2 62.2 33.4 0.75 .03
ROD→CHR performance 46 32 18 20 69.7 64.0 66.9 71.9 61.5 33.4 0.76 .16
CHR→ROD performance 43 37 18 22 66.2 67.3 66.7 70.5 62.7 33.2 0.75 .09
Role functioning outcomes
Clinical models
Transdiagnostic performance 75 76 27 58 56.4 73.8 65.1 73.5 56.7 30.3 0.67 .03
ROD→CHR performance 41 38 9 28 59.4 80.9 70.1 82.0 57.6 39.6 0.71 .04
CHR→ROD performance 34 38 18 30 53.1 67.9 60.5 65.4 55.9 21.3 0.64 .14
sMRI models
Transdiagnostic performance 82 53 50 51 61.7 51.5 56.6 62.1 51.0 13.1 0.58 .14
ROD→CHR performance 46 22 25 23 66.7 46.8 56.7 64.8 48.9 13.7 0.56 .16
CHR→ROD performance 36 31 25 28 56.3 55.4 55.8 59.0 52.5 11.6 0.59 .27
Combined models
Transdiagnostic performance 81 71 32 52 60.9 68.9 64.9 71.7 57.7 29.4 0.69 .03
ROD→CHR performance 44 28 19 25 63.8 59.6 61.7 69.8 52.8 22.7 0.70 .16
CHR→ROD performance 37 43 13 27 57.8 76.8 67.3 74.0 61.4 35.4 0.68 .03

Abbreviations: CHR, clinical high-risk [state]; ROD, recent-onset depression; sMRI, structural magnetic resonance imaging.

a

Models were first trained on the ROD group and then applied to the CHR sample. Then the CHR group served as the optimization sample while the ROD group was used as validation cohort. The ensemble-based decision scores of the respective validation sample were used to measure transdiagnostic and directed out-of-sample performances. Transdiagnostic and directed model significances were assessed by computing the prognostic summary index in 1000 random label permutations and comparing them to the observed prognostic summary index of the respective model. P values were adjusted for multiple comparisons using the false-discovery rate.

Figure 1. Comparison of Functional Baseline and Combined Model Signatures.

Figure 1.

The predictive value of baseline global functioning scores used by models with significant associations with functional outcomes was measured in terms of the variable selection frequency across all the support-vector machine models generated in the nested leave-site-out cross-validation experiment. A value of 1 indicates that all models had retained the given variable during sequential backward feature elimination. Horizontal bar plots show the variable selection profiles of the clinical models making predictions of social functioning scores (A) and role functioning scores (B) in the group in the clinical high-risk (CHR) state and the model trained on social functioning scores from patients with recent-onset depression (ROD) (C), with orange lines at 0.5, which equals 50% of support-vector machine models’ selected given variable. Reliability profiles of the combined social functioning model, trained in the patients in CHR states (D) and patients with ROD (E); and a reliability profile model trained on role functioning scores from patients with ROD (F), with orange lines at a cross-validation ratio of 2, which indicates 95% confidence in the reliable involvement of given variable in the model's decision rule. MRI indicates magnetic resonance imaging.

The sMRI-based prediction models determined social-functioning outcomes in the CHR groups with a balanced accuracy of 76.2% (sensitivity: 80.3%, specificity: 72.0%; P = .002; Table 2). The sMRI-based prediction models determined social functioning in the patients with ROD with a balanced accuracy of 65.0%, a sensitivity of 64.6%, and a specificity of 65.5% (P = .04). The performance of models was not influenced by site effects (eTable 7 and eFigure 7 in the Supplement), follow-up duration (eFigure 6 in the Supplement), or baseline functional differences between outcome classes (eFigure 8 in the Supplement). In contrast with the social functioning domain, sMRI data could not be used to accurately estimate role-functioning outcomes (Table 2).

Divergent neuroanatomical patterns (Figure 2) impeded the sMRI model transfer between study groups (Table 3). In the group in CHR states, social functioning impairments at follow-up were associated with (1) reduced baseline GMV in medial prefrontal, cingulate, orbitofrontal, insular, temporal, parietal, and occipital brain regions, and (2) increased cerebellar, dorsomedial, and dorsolateral prefrontal GMVs (Figure 2A). To understand whether this signature represented a pattern of neuroanatomical abnormality, we compared the prognostic samples in CHR states to the data from matched healthy control participants. The reductions in GMV and increments that were associated with impaired social-functioning outcomes differentiated patients in CHR states who had a poor prognosis (defined as a poor outcome predicted by the model, as distinct from observed impairment at follow-up) from healthy control participants (eFigure 8 in the Supplement).

Figure 2. Comparison of Predictive Neuroanatomical Baseline Signatures in Patient Groups, Detected by the Structural Magnetic Resonance Imaging–Based Model.

Figure 2.

The reliability of predictive voxels in significant models was measured via a cross-validation ratio map with a threshold of ± 2, which corresponded to an α level of .05. Color scales indicate increased vs decreased gray matter volume in individuals in the clinical high-risk state or with recent-onset depression who were impaired on follow-up, compared with patients with no impairment on follow-up. The open-source 3-dimensional rendering software MRIcroGL (McCausland Center for Brain Imaging, University of South Carolina; https://www.nitrc.org/projects/mricrogl/) was used to overlay the cross-validation ratio maps on the Montreal Neurological Institute single-participant template and produce 3-dimensional renderings and axial mosaic slices. The cool color scale indicates increased gray matter volume and the warm color scale reduced gray matter volume in individuals in clinical high-risk states or with recent-onsent depression who were impaired on follow-up, compared with patients with no impairment at follow-up.

Different from the group in CHR states, the neuroanatomical pattern associated with social-functioning outcomes in patients with ROD included (1) reduced GMV in the hippocampus, amygdala, inferior temporal cortex, thalamus, and dorsal anterior cingulate cortex, and (2) increased GMV in the medial and lateral prefrontal, orbitofrontal, insular, and superior temporal cortices. These GMV increments, but not the temporolimbic reductions, were encountered again when comparing patients with ROD and poor prognoses with healthy control participants using VBM (eFigure 9 in the Supplement). In contrast, patients with ROD and unimpaired social functioning prognosis showed reduced prefrontal GMV and increased temporolimbic GMV compared with healthy control participants.

Combined models predicting social functioning scores estimated the outcomes of patients in CHR states with a balanced accuracy of 82.7% (sensitivity: 83.2%; specificity: 82.0%; P < .001; Table 2). The same models estimated outcomes of patients with ROD with a balanced accuracy of 70.3% (sensitivity: 76.9%; specificity: 63.6%; P = .01). The combined models’ prognostic summary index (PSI) outperformed the sMRI-based models’ PSI by 12.2% in the CHR group (sMRI model: 52.6%; combined model: 64.8%) and 11.5% in the ROD group (sMRI model: 29.9%; combined model: 41.4%); the prognostic summary index outperformed clinical models by 11.9% in the CHR group (clinical model: 52.9%; combined model: 64.8%) and 9.4% in the ROD group (clinical model: 32.0%; combined model: 41.4%). Furthermore, the sequential social functioning prediction analysis showed that, with increasing clinical model uncertainty (decision scores closer to the support vector machines’ decision boundary), the prognostic summary index of the combined model increased to 82.6% in the group in CHR states and was stable (35%-50%) in patients with ROD (eFigures 12 and 13 in the Supplement). Thus, in ambiguous cases, combined models provided a 1.9-fold prognostic gain for patients in the CHR state and a 10.5-fold prognostic gain for patients with ROD compared with a purely clinical prediction model that evaluated the patients' social and role functioning at baseline and before study inclusion.

Finally, expert raters’ global functioning estimates correctly identified the social functioning outcomes of participants in CHR states with a balanced accuracy of 71.8% (sensitivity: 51.5%, specificity: 92.0%). Expert raters accurately identified the social-functioning outcomes for participants with ROD with a balanced accuracy of 59.6% (sensitivity: 26.6%; specificity: 92.6%). The raters’ estimates correctly identified role-functioning outcomes with a balanced accuracy of 70.4% (sensitivity: 49.3%; specificity: 91.5%) for patients in CHR states and a balanced accuracy of 57.9% (sensitivity: 25.0%; specificity: 90.7%) for patients with ROD. Thus, the raters underestimated the risk of impairment in social and role functioning in patients in CHR states and patients with ROD at follow-up (Table 2). Models outperformed raters in all predictive tasks (Table 2 and eTable 9 in the Supplement) and were not influenced by the patients’ age, sex, or ethnicity (eTable 13 in the Supplement).

Transdiagnostic Prognostic Generalization

In the CHR group, a poor social functioning prognosis as provided by the clinical prediction model was associated with an increased prevalence of DSM-IV-TR diagnoses at follow-up: 13 of 49 patients in CHR states (27.1%) with poor prognoses (eTable 10 in the Supplement) had a major depressive disorder at follow-up, compared with 0% in the group with a good prognosis (χ21 = 15.8; P < .001). Hence, in these patients, the clinical prediction model projected a major depressive disorder at follow-up with a balanced accuracy of 79.5% (P < .001; eTable 10 in the Supplement). Similarly, 25 of 49 patients in CHR states (51%) who had poor prognoses had at least 1 DSM-IV-TR mood, anxiety, or substance use disorder, compared with 6 of the 52 patients in CHR states (11.5%) who had good prognoses (χ21 = 18.5; P < .001; balanced accuracy, 73.2%; P = .03). The clinical model predicting social functioning significantly generalized to the prediction of these diagnostic outcomes (eTable 10 in the Supplement). However, only the sMRI model consistently assigned a poor social functioning prognosis to the patients who transitioned to psychosis (balanced accuracy, 72.7%; P = .01), resulting in a transition risk of 11.9% for those with poor prognoses (8 of 67) vs 0% in those with prognoses of good outcomes (χ21 = 6.28; P = .02). In patients with ROD, social functioning predictions did not generalize to diagnostic outcomes.

Discussion

Persistent social and role functioning deficits drive the personal and socioeconomic burden of psychotic and mood disorders.41 Yet mental health care lacks the computational tools that could enable the early recognition of these deficits in help-seeking patients.42,43 Such prognostic tools may catalyze the development of novel biobehavioral therapies for individualized secondary and tertiary prevention.4,44,45,46,47 In this article, we report on what is to our knowledge the first international effort to develop such tools for the prediction of functional outcomes in young patients at risk for psychosis or recurrent depression.48 Via thoroughly cross-validated machine-learning methods, we found that social functioning impairments can be correctly predicted in up to 83% of patients in CHR states and 70% of patients with ROD who were recruited from community-based and hospital-based pathways to care across geographically distinct European populations. These results suggest that the individualized quantification of risk for impaired functional recovery is feasible despite site-associated heterogeneity and even without a prestudy calibration of sMRI procedures. Additionally, our inclusive study protocol running in clinical early recognition services facilitated the prognostic algorithms’ derivation and validation in patients representing some of the real-world diversity of CHR states for psychosis, depression, and comorbid psychiatric conditions. In this realistic test bed of model generalizability, we observed that role functioning was less clearly associated with predictors than social functioning when analyzed functional baseline data was used and was even less so when structural neuroimaging data was used. Role functioning may be more strongly determined by concurrent environmental and clinical factors than social deficits, leading to a greater degree of temporal fluctuation, which in turn potentially mediates differential associations with baseline clinical and neuroanatomical predictors (eFigure 4 in the Supplement).28,49,50 Future research should therefore assess whether the inclusion of environmental and clinical variables may improve the association with outcomes of role functioning deficits in similar help-seeking populations.

Importantly, we observed that combined models integrating clinical and brain structural data outperformed human clinical raters, suggesting that these models could improve the prognostic process beyond the current level. Interestingly, clinical raters overestimated patients’ social functioning improvement, particularly in the ROD group, in which only 27% of patients who ultimately experienced impaired outcomes were correctly identified. An additional sensitivity analysis showed that raters performed better in patients with ROD when impaired social functioning was categorized at lower cutoff values, suggesting that prognostic reasoning is sensitive to more severe functional deficits at follow-up (eTable 14 in the Supplement). In the group in CHR states, however, raters prognosticated best at the original cutoff levels but were less accurate than our machine learning models. This observation suggests that internal heuristics, which are potentially informed by the study groups’ differing clinical profiles, may influence clinicians’ prognostication. Taken together, rater-based prognostication may considerably overestimate vulnerable patients’ capacity to recover from social functioning deficits. Further research is needed to understand the factors governing functional prognostication in psychiatry to design algorithms that optimally mitigate prognostic bias.

The comparisons of models revealed that combined risk stratification generally outperformed unimodal prediction models. Despite the benefits of combined prediction models, however, our clinical models evaluating only 8 functioning variables would provide a cost-effective first-line strategy for estimating the risk of future social disability similar to the psychosis, depression, and suicide risk calculators recently proposed for secondary and outpatient care.12,21,23,51 In the group with CHR states, we were able to show that our functional risk calculator not only estimated future social impairment but also broader psychiatric morbidity (eTable 10 in the Supplement). These findings were corroborated by the observation that patients in CHR states with an MRI-based prognosis of impaired social functioning experienced unremitting symptoms, occupational disability, and poor quality of life (eFigure 10 in the Supplement). Thus, risk calculators for social impairment may provide accessible tools for a more generalized psychiatric risk screening for individuals in the CHR state. In contrast, the models specific to patients with ROD did not show a comparable prognostic generalizability. This discrepancy may align with recent findings revealing pronounced social cognition deficits in individuals with psychosis vs individuals with depression,52 and a close link between psychiatric morbidity, social functioning, and social cognitive processes in psychosis.53,54,55

Because MRI is cost intensive, we explored whether sequential predictive modeling could provide a rationale for the targeted use of structural neuroimaging (eFigures 12 and 13 in the Supplement). We observed pronounced benefits of blending sMRI and functional data in patients with increasingly ambiguous clinical decision scores, suggesting that the cost-benefit ratio of sMRI can be maximized by including it at a later, more elaborated stage of the prognostic workflow. Notably, this may include the assessment of transition risk based on the finding that only the sMRI-based model predicting social functioning showed significant prognostic generalizability in this context (eTable 10 in the Supplement). Taken together, these results may provide a first empirical account of prognostic improvements brought about by sequential multimodal risk assessment.30 Future studies should assess the added value of different data combinations, including neurocognition,18,56electroencephalography,20 sensor-based activity patterns,32 and language patterns,57 as well as multiomics information.58

We observed striking differences between the neuroanatomical patterns associated with different social-functioning outcomes in the patients in the CHR state and the patients with ROD. In patients in the CHR state, impaired functioning was associated with GMV alterations that represented a deviation from normal brain variation and that mapped to the salience network,59 the perisylvian language-associated system, the default-mode network, and the central executive network.60 Similar GMV reductions have been previously described in studies comparing the CHR, first-episode psychosis, and relapsing stages of psychosis with healthy control participants.61,62 Longitudinal data pointed to altered neurodevelopmental trajectories of these brain systems, suggesting a disturbed process of cortical reorganization in different stages of psychosis development.63,64,65,66,67 Structural dysmaturation affecting these brain systems may influence the capacity to switch between self-referential thinking, salience attribution, and executive functioning,68,69 thus disrupting complex processes of social cognition and behavior, and finally predisposing to poor functional outcomes of the CHR state.53

In contrast, impaired social functioning in the group with ROD was associated with extended prefrontal, insular, and lateral temporal GMV increments. This pattern also differentiated patients from healthy control participants. Brain volume reductions focused on the medial temporal lobe, the dorsal anterior cingulate cortex, and temporooccipital cortices. While these abnormalities have been associated with earlier disease onset and poor outcomes of patients with major depression,70 findings in prefrontal and temporal areas have remained equivocal; for example, a recent VBM meta-analysis of ROD reported increased insular, thalamic, and temporal brain volumes and decreased dorsolateral prefrontal cortical volumes.71 However, extended insular and prefrontal volume reductions were particularly found in patients with relapsing depression and early disease onset.72,73 Together with our findings, this may point to dynamic brain volume changes with potentially insufficient prefrontal compensatory processes in patients with ROD who fail to recover.

These largely nonoverlapping neuroanatomical patterns of impaired social functioning outcome explain the low MRI model transferability between the 2 diagnostic groups. This finding challenges the hypothesis of shared brain surrogates underlying transdiagnostic phenotypes, such as the Systems for Social Processes domain proposed by the National Institute of Mental Health’s Research Domain Criteria.74 Alternatively, the recently revealed brain-behavioral heterogeneity of depression75 may have impeded our algorithms from detecting a salient and thus generalizable neuroanatomical signature of social functioning in the ROD group and/or reduced the generalizability of the CHR-specific model to an umbrella construct of depression. These alternative hypotheses call for more research using subtyping strategies76 to test whether the current neurobiological and outcome-associated heterogeneity of mental disorders can be deconvolved into patient strata with distinct prognostic profiles.

Limitations

One limitation may be the dichotomization of the global functioning scales and the use of classification models for prediction. Regression requires a sufficient representation of the tails in the target scale to learn a predictive pattern explaining the scale’s full range. Because this requirement was not met by our data (eFigure 3 in the Supplement), we preferred classification to regression models. Notably, based on the high correlation between the patients’ ordinal social functioning follow-up scores and the outcome probability estimates of the combined models asssessing social functioning (Table 2), we tested whether post hoc regression models could successfully map these estimates to the global functioning score range. The low mean average errors of these models (eFigure 11 in the Supplement) suggest that continuous targets could be approximated through soft classification.

Conclusions

In summary, we identified generalizable clinical, imaging-based, and combined prediction models of persistent social functioning impairments in young patients at increased risk for psychosis and recurrent depression. To further elucidate the clinical, environmental, and neurobiological factors that facilitate or limit the transferability of the risk calculators presented here, external and prospective validation is needed in ethnically diverse patient populations recruited at sites beyond the European catchment areas of this study. This is the next important step toward quantifying the feasibility and utility of precision psychiatry approaches for the secondary and tertiary prevention of severe mental illnesses.

Supplement.

eMethods.

eResults.

eReferences.

eTable 1. Descriptive analysis of the sociodemographic and functioning data of the HC sam-ples matched for site, age and sex to the CHR and ROD groups.

eTable 2. Characteristics of the recruiting institutions in the PRONIA consortium.

eTable 3. Clinical and neurocognitive examinations performed in the CHR, ROD, recent-onset psychosis (ROP), and HC groups during the 18-month follow-up period of the study.

eTable 4. MR scanner systems and structural MRI sequence parameters used at the respec-tive PRONIA sites.

eTable 5. DGPPN S3 Guidelines for the treatment of first-episode psychosis and schizo-phrenia.

eTable 6. Intra-class correlation analysis of the GF:S / GF:R scores generated by the PRO-NIA raters on the test cases.

eTable 7. Comparison of the performance measures obtained from the leave-site-out valida-tion of the original MRI-based GF:S outcome predictor and the predictor trained on the GMV data of age- and sex-matched healthy controls.

eTable 8. Comparison of the performance measures of the MRI-based GF:S outcome pre-dictors and sMRI-based classifiers predicting the baseline GF:S classes of the same CHR or ROD individuals.

eTable 9. Pairwise comparisons of classifier performance using McNemar’s tests.

eTable 10. Prognostic generalization performance of clinical, imaging-based, and combined models trained to predict social functioning outcomes in the CHR and ROD groups.

eTable 11. Prevalence comparisons of the DSM-IV-TR diagnoses in the CHR and ROD samples characterized by impaired vs. good social and role functioning at baseline (T0) and at the T1 follow-up examination.

eTable 12. List of the SCID-IV diagnoses in CHR and ROD patients who developed a psy-chotic disorder during the follow-up period.

eTable 13. Interactions between classification performance and age, sex, and ethnicity.

eTable 14. Assessment of expert raters’ prediction performance as a function of decreasing categorization thresholds applied to the CHR individuals and ROD patients follow-up GF:S scores.

eFigure 1. Observational study design of PRONIA.

eFigure 2. CONSORT Chart (A) and design of the main machine learning analyses per-formed in the multi-site discovery database of PRONIA (B).

eFigure 3. GF:S (left) and GF:R (right) score distributions of the CHR and ROD study group at the baseline and follow-up examinations.

eFigure 4. Histogram analysis of GF:S (blue) and GF:R (orange) changes over time in the CHR (left) and ROD (right) groups.

eFigure 5. Image quality assessment performed in the T1-weighted images of 412 study participants using the quality assessment functionality of the CAT12 toolbox.

eFigure 6. Correlation analyses were conducted to assess whether the prognostic decision scores generated by the clinical and sMRI classifiers were influenced by the follow-up inter-vals in the CHR and ROD groups.

eFigure 7. The predictive signature underlying the original GF:S outcome prediction model (A) was qualitatively compared to the signature produced by the site effects analysis (B).

eFigure 8. Results of voxel-based analysis of variance between 67 CHR persons with pre-dicted impaired (CHRImpaired) GF:S outcome vs. 49 CHR persons with predicted good (CHRGood) GF:S outcomes (A) and 67 CHR persons with predicted impaired GF:S outcome vs. 116 healthy volunteers matched for site, age, and sex to the CHR group (B).

eFigure 9. Results of voxel-based analysis of variance between 120 healthy volunteers and 60 ROD persons with predicted good (RODGood) social functioning outcome (A), 120 healthy volunteers and 60 ROD patients with predicted impaired (RODImpaired) social functioning out-comes, (B) and the ROD patients with predicted good vs. impaired outcomes at follow-up (C).

eFigure 10. Prognostic generalization of the sMRI-based classifiers across 4 psychometric factors detected by Non-Negative Matrix Factorization (NNMF).

eFigure 11. Scatter plots in the upper panel show associations between observed GF:S scores (GF:Sobs) at follow-up and classification probabilities produced by combined clinical-sMRI based GF:S outcome predictor in the CHR (left) and ROD (right) group.

eFigure 12. Analysis of a sequential clinical-combined outcome predictor algorithm in the CHR group.

eFigure 13. Analysis of a clinical-combined outcome predictor algorithm in the ROD group.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Supplement.

eMethods.

eResults.

eReferences.

eTable 1. Descriptive analysis of the sociodemographic and functioning data of the HC sam-ples matched for site, age and sex to the CHR and ROD groups.

eTable 2. Characteristics of the recruiting institutions in the PRONIA consortium.

eTable 3. Clinical and neurocognitive examinations performed in the CHR, ROD, recent-onset psychosis (ROP), and HC groups during the 18-month follow-up period of the study.

eTable 4. MR scanner systems and structural MRI sequence parameters used at the respec-tive PRONIA sites.

eTable 5. DGPPN S3 Guidelines for the treatment of first-episode psychosis and schizo-phrenia.

eTable 6. Intra-class correlation analysis of the GF:S / GF:R scores generated by the PRO-NIA raters on the test cases.

eTable 7. Comparison of the performance measures obtained from the leave-site-out valida-tion of the original MRI-based GF:S outcome predictor and the predictor trained on the GMV data of age- and sex-matched healthy controls.

eTable 8. Comparison of the performance measures of the MRI-based GF:S outcome pre-dictors and sMRI-based classifiers predicting the baseline GF:S classes of the same CHR or ROD individuals.

eTable 9. Pairwise comparisons of classifier performance using McNemar’s tests.

eTable 10. Prognostic generalization performance of clinical, imaging-based, and combined models trained to predict social functioning outcomes in the CHR and ROD groups.

eTable 11. Prevalence comparisons of the DSM-IV-TR diagnoses in the CHR and ROD samples characterized by impaired vs. good social and role functioning at baseline (T0) and at the T1 follow-up examination.

eTable 12. List of the SCID-IV diagnoses in CHR and ROD patients who developed a psy-chotic disorder during the follow-up period.

eTable 13. Interactions between classification performance and age, sex, and ethnicity.

eTable 14. Assessment of expert raters’ prediction performance as a function of decreasing categorization thresholds applied to the CHR individuals and ROD patients follow-up GF:S scores.

eFigure 1. Observational study design of PRONIA.

eFigure 2. CONSORT Chart (A) and design of the main machine learning analyses per-formed in the multi-site discovery database of PRONIA (B).

eFigure 3. GF:S (left) and GF:R (right) score distributions of the CHR and ROD study group at the baseline and follow-up examinations.

eFigure 4. Histogram analysis of GF:S (blue) and GF:R (orange) changes over time in the CHR (left) and ROD (right) groups.

eFigure 5. Image quality assessment performed in the T1-weighted images of 412 study participants using the quality assessment functionality of the CAT12 toolbox.

eFigure 6. Correlation analyses were conducted to assess whether the prognostic decision scores generated by the clinical and sMRI classifiers were influenced by the follow-up inter-vals in the CHR and ROD groups.

eFigure 7. The predictive signature underlying the original GF:S outcome prediction model (A) was qualitatively compared to the signature produced by the site effects analysis (B).

eFigure 8. Results of voxel-based analysis of variance between 67 CHR persons with pre-dicted impaired (CHRImpaired) GF:S outcome vs. 49 CHR persons with predicted good (CHRGood) GF:S outcomes (A) and 67 CHR persons with predicted impaired GF:S outcome vs. 116 healthy volunteers matched for site, age, and sex to the CHR group (B).

eFigure 9. Results of voxel-based analysis of variance between 120 healthy volunteers and 60 ROD persons with predicted good (RODGood) social functioning outcome (A), 120 healthy volunteers and 60 ROD patients with predicted impaired (RODImpaired) social functioning out-comes, (B) and the ROD patients with predicted good vs. impaired outcomes at follow-up (C).

eFigure 10. Prognostic generalization of the sMRI-based classifiers across 4 psychometric factors detected by Non-Negative Matrix Factorization (NNMF).

eFigure 11. Scatter plots in the upper panel show associations between observed GF:S scores (GF:Sobs) at follow-up and classification probabilities produced by combined clinical-sMRI based GF:S outcome predictor in the CHR (left) and ROD (right) group.

eFigure 12. Analysis of a sequential clinical-combined outcome predictor algorithm in the CHR group.

eFigure 13. Analysis of a clinical-combined outcome predictor algorithm in the ROD group.


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