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. 2018 Nov 21;8:17195. doi: 10.1038/s41598-018-35479-0

Figure 8.

Figure 8

Discrimination of a single-nucleotide difference in the EGFR locus by Two-Step ORNi-PCR. (A) Nucleotide mutation leading to a Leu858Arg amino acid change in the human EGFR locus in NCI-H1975 cells. Forward DNA sequences around the Leu858 position (underlined) of both alleles are shown. (B) Target position of ORN_EGFR_L858, a 21 base ORN targeting the human EGFR locus. The forward DNA sequence around the Leu858 position (underlined) of one allele is shown. (C) Conditions for Two-Step ORNi-PCR using ORN_EGFR_L858. (D) Results of Two-Step ORNi-PCR. M, molecular weight markers. (E) DNA sequencing of Two-Step ORNi-PCR products from (D) purified from agarose gels and subjected to DNA sequencing analysis using a forward primer. (F) Mode of discrimination of a single-nucleotide difference by Two-Step ORNi-PCR. ORN_EGFR_L858 hybridises with the intact target site but not the mutated site at an annealing plus elongation step temperature of 59 °C.